View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1286_low_3 (Length: 370)
Name: NF1286_low_3
Description: NF1286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1286_low_3 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 25 - 370
Target Start/End: Original strand, 23852161 - 23852506
Alignment:
| Q |
25 |
aacagattcaattttgttttgagaaaggttaagcaattccaaagaagtcaaatttcgaagagctaatggaagtgagccattaagagcatttcttcgaaga |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852161 |
aacagattcaattttgttttgagaaaggttaagcaattccaaagaagtcaaatttcgaagagctaatggaagtgagccattaagagcatttcttcgaaga |
23852260 |
T |
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| Q |
125 |
taaagatgttgaagtttggcacaattactcaaccaaaatggaactgaactaagactattgttagaaaggacaataacttcaacggaagtcatgtttctaa |
224 |
Q |
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| T |
23852261 |
taaagatgttgaagtttggcacaattactcaaccaaaatggaactgaactaagactattgttagaaaggacaataactttaacggaagtcatgtttctaa |
23852360 |
T |
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| Q |
225 |
aaacattcagatctggaccatcaagtccattatctgcaagattgagtgtcttaatactagaaaagtttgtgtaactaactagtttatgatcactactgtg |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852361 |
aaacattcagatctggaccatcaagtccattatctgcaagattgagtgtcttaatactagaaaagtttgtgtaactaactagtttatgatcactactgtg |
23852460 |
T |
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| Q |
325 |
catcttggttatgctgcagttcatcaagtctaattctaacaaagaa |
370 |
Q |
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| T |
23852461 |
catcttggttatgctgcagttcatcaagtctaattctaacaaagaa |
23852506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 370
Target Start/End: Original strand, 22618853 - 22619198
Alignment:
| Q |
25 |
aacagattcaattttgttttgagaaaggttaagcaattccaaagaagtcaaatttcgaagagctaatggaagtgagccattaagagcatttcttcgaaga |
124 |
Q |
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||||||||||||||||||||| ||||||| ||| ||| ||| ||||||||||||| ||||||| |||||| ||| || ||||||||||| |||| |||| |
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| T |
22618853 |
aacagattcaattttgttttgggaaaggtctagctatttcaaggaagtcaaatttctaagagcttatggaactgaacctttaagagcattgcttccaaga |
22618952 |
T |
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| Q |
125 |
taaagatgttgaagtttggcacaattactcaaccaaaatggaactgaactaagactattgttagaaaggacaataacttcaacggaagtcatgtttctaa |
224 |
Q |
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||||||| | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |
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| T |
22618953 |
taaagatagtcaagtttggcacaattactcaaccaaattggaactgaactaatactattgttagaaaggttaatattttcaattgaagtcatgtttctaa |
22619052 |
T |
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| Q |
225 |
aaacattcagatctggaccatcaagtccattatctgcaagattgagtgtcttaatactagaaaagtttgtgtaactaactagtttatgatcactactgtg |
324 |
Q |
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| T |
22619053 |
aagcattcagatctggaccatcaagtctattatctgcaagattgagtgatttaatactagaaaaatttgtgtaactaacaagttgttgatcatgactgtg |
22619152 |
T |
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| Q |
325 |
catcttggttatgctgcagttcatcaagtctaattctaacaaagaa |
370 |
Q |
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| T |
22619153 |
catcttggttatgcttcagttcttcaattctaattctatcaaagaa |
22619198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 370
Target Start/End: Original strand, 23751460 - 23751805
Alignment:
| Q |
25 |
aacagattcaattttgttttgagaaaggttaagcaattccaaagaagtcaaatttcgaagagctaatggaagtgagccattaagagcatttcttcgaaga |
124 |
Q |
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||||||||||||||||||||| ||||||| ||| ||| ||| ||||||||||||| ||||||| |||||| ||| || ||||||||||| |||| |||| |
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| T |
23751460 |
aacagattcaattttgttttgggaaaggtctagctatttcaaggaagtcaaatttctaagagcttatggaactgaacctttaagagcattgcttccaaga |
23751559 |
T |
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| Q |
125 |
taaagatgttgaagtttggcacaattactcaaccaaaatggaactgaactaagactattgttagaaaggacaataacttcaacggaagtcatgtttctaa |
224 |
Q |
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||||||| | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |
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| T |
23751560 |
taaagatagtcaagtttggcacaattactcaaccaaattggaactgaactaatactattgttagaaaggttaatattttcaattgaagtcatgtttctaa |
23751659 |
T |
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| Q |
225 |
aaacattcagatctggaccatcaagtccattatctgcaagattgagtgtcttaatactagaaaagtttgtgtaactaactagtttatgatcactactgtg |
324 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||||| |||||| |
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| T |
23751660 |
aagcattcagatctggaccatcaagtctattatctgcaagattgagtgatttaatactagaaaaatttgtgtaactaacaagttgttgatcatgactgtg |
23751759 |
T |
|
| Q |
325 |
catcttggttatgctgcagttcatcaagtctaattctaacaaagaa |
370 |
Q |
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| T |
23751760 |
catcttggttatgcttcagttcttcaattctaattctatcaaagaa |
23751805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 25 - 300
Target Start/End: Complemental strand, 20573319 - 20573044
Alignment:
| Q |
25 |
aacagattcaattttgttttgagaaaggttaagcaattccaaagaagtcaaatttcgaagagctaatggaagtgagccattaagagcatttcttcgaaga |
124 |
Q |
| |
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|||||||||||| |||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |
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| T |
20573319 |
aacagattcaatgttgttttgggaaaggtcaagcaacgtcaaggaagtcaaatttcgaagagctaatggaagtgagccattgagagcattgcttccgaga |
20573220 |
T |
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| Q |
125 |
taaagatgttgaagtttggcacaattactcaaccaaaatggaactgaactaagactattgttagaaaggacaataacttcaacggaagtcatgtttctaa |
224 |
Q |
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|||||| ||||| |||||||||| |||||||||||||||||||| | ||||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
20573219 |
gaaagataacccagttttgcacaattacctaaccaaaatggaactgaactgattctattgttagaaaggtcaatagtttcaattgaagtcatgtttctaa |
20573120 |
T |
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| Q |
225 |
aaacattcagatctggaccatcaagtccattatctgcaagattgagtgtcttaatactagaaaagtttgtgtaact |
300 |
Q |
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| T |
20573119 |
aagcattcagatttggaccattaagtccattatctgcaagattgagtgacttaatgctagaaaaatttgtgtaact |
20573044 |
T |
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