View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1286_low_6 (Length: 318)
Name: NF1286_low_6
Description: NF1286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1286_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 25084495 - 25084779
Alignment:
| Q |
20 |
tagatagatatatgagataatcttattttatctgaaagcataggcatacaaataatgtaactaaataaa-tatacagcctccataaaaaacgcaaaaact |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25084495 |
tagatagatatatgagataatcttattttatctgaaagcataggcatacaaataatgtaactaaataaaatatacagcctccataaaaaacgcaaaaact |
25084594 |
T |
|
| Q |
119 |
agcacaaaggtaggaagcgctgatccgcacagacgcattaaaatgaaaacggaccgttcaaatatacttatcgacggtcattattatttttctcaatacg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25084595 |
agcacaaaggtaggaagcgctgatccgcacagacgcattaaaatgaaaacggaccgttcaaatatactcatcgacggtcattattatttttctcaatacg |
25084694 |
T |
|
| Q |
219 |
cacggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagagaaaaacacaaatttgagtttccctcttattcatc |
303 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25084695 |
cacggatcgctaatttagaccgtcaataagttgaaatccaacgacgcagagaaaaacacaaatttgagtttccctcttattcatc |
25084779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 106 - 288
Target Start/End: Complemental strand, 24924096 - 24923913
Alignment:
| Q |
106 |
aaacgcaaaaactagcacaaaggtaggaagcgctgatccgcacagacgcatt-aaaatgaaaacggaccgttcaaatatacttatcgacggtcattatta |
204 |
Q |
| |
|
|||| ||||||||| | |||||| || ||| |||||||||||||| || || ||||||| | | |||||||||||| ||||||||||| ||| |||| |
|
|
| T |
24924096 |
aaacacaaaaactaacgcaaaggaagaaagtgctgatccgcacaggcgaatccaaaatgatatctcaccgttcaaataaacttatcgacgttcactattc |
24923997 |
T |
|
| Q |
205 |
tttttctcaatacgcacggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagagaaaaacacaaatttgagtt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
24923996 |
tttttctcaatacgcacggatcgctaatataaaccgtcgataacttaaaatccaacgacgcagaagaaaacacaaaattgagtt |
24923913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 138 - 296
Target Start/End: Complemental strand, 24920471 - 24920312
Alignment:
| Q |
138 |
ctgatccgcacagacgcattaaaatgaaaacggaccgttcaaatatacttatcgacggtcattattatttttctcaa-tacgcacggatcgctaatttag |
236 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||| ||| |||| |||| | || ||| | |||||||||||| ||| |
|
|
| T |
24920471 |
ctgatccgcacaggctaattcaaatgaaaacggaccgttcaaatatacttatcaacgttcagtattgttttggtgaactacacgcggatcgctaatatag |
24920372 |
T |
|
| Q |
237 |
accgtcgataagttgaaatccaacgacgcagagaaaaacacaaatttgagtttccctctt |
296 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||| || |||||||||||| |
|
|
| T |
24920371 |
accgtcgataagttgaaatccaacgacacagaagaaaacacaaaattcagtttccctctt |
24920312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 24981719 - 24981799
Alignment:
| Q |
221 |
cggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagagaaaaacacaaatttgagtttccctcttattca |
301 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||||||||||||| |||| |||||||||| || ||||||||||||||||| |
|
|
| T |
24981719 |
cggatcgctaatatagatcgtcgataagatgaaatccaacgactcagatcaaaacacaaaattcagtttccctcttattca |
24981799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 21585090 - 21585022
Alignment:
| Q |
212 |
caatacgcacggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagagaaaaacacaaa |
280 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| | | |||||||||||| || | |||||||||| |
|
|
| T |
21585090 |
caatacgcacggatcgccaatttaaaccgtcgattacgtaaaatccaacgacccatatcaaaacacaaa |
21585022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University