View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12870_high_7 (Length: 250)
Name: NF12870_high_7
Description: NF12870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12870_high_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 38730084 - 38730321
Alignment:
| Q |
14 |
agagaatgacattaatctccgtcaaaaaccttaaaatattaggtatgcgagtcttctatctcgtatattaaacattttactcgtttataagccatgtgaa |
113 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
38730084 |
agagaatgacactaatctctgtcaaaaaccttaaaatattagatatgcgagtcttctatctcgtatattaaacattttactcgtttataaacgatgtgaa |
38730183 |
T |
|
| Q |
114 |
actaatcactcacacttaaactcaaccaatcctattgtgttaccatcaagcgttaagtattgtcttgtattcatatcttgtaaatagaacaaatatggtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38730184 |
actaatcactcacacttaaactcaaccaatcctattatgttaccatcaagcgttaagtattgtcttgtattcatatcttgtaaatagaacaaatatggtt |
38730283 |
T |
|
| Q |
214 |
ggaat-ataaactccacaaatatttattggtcaagatt |
250 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38730284 |
ggaatgataaactccacaaatatttattggtcaagatt |
38730321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University