View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12870_low_1 (Length: 448)
Name: NF12870_low_1
Description: NF12870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12870_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 7551254 - 7551675
Alignment:
| Q |
10 |
gcagagatagtttatagcataagttggcattatttgaaatgctataattccaaatttacaaggtaggcattgacatccaaaacattctgatattgacttg |
109 |
Q |
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| T |
7551254 |
gcagagatagtttatagcataagttggcattatttgaaatgctataattccaaatttacaaggtaggcattgacatccaaaacattctgatattgacttg |
7551353 |
T |
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| Q |
110 |
cctatcagttcagcaatgatataagaatggtttactaaattgcgatgtatacaactatactttttgacatgctttcagataaatgtgccagccttacaac |
209 |
Q |
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| T |
7551354 |
cctctcagtccagcaatgatataagaatggtttactaaattgcgatgtatacaactatactttttgacatgctttcagataaatgtgccagccttacaac |
7551453 |
T |
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| Q |
210 |
tatacttttgttccttgttcttctagattacttatgctcttgtggaaatctttannnnnnnncctgttttcctacaatagcaccttcctatgagttatgt |
309 |
Q |
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| T |
7551454 |
tatactttttttccttgttcttctagattacttatgctcttgtggaaatcttta-tttttttcctgttttcctacaatagcaccttcctatgagttatgt |
7551552 |
T |
|
| Q |
310 |
ttttaaaattgctacattttctcctttgggaacataacattgtatactaacttttatagactttcgacattttggtttatccttgcaggaccatattttg |
409 |
Q |
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| T |
7551553 |
ttgtaaaattgctacattttctgctttgggaacataacattgtatactaacttttatagactttcgacattttggtttatccttgcagaaccatattttg |
7551652 |
T |
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| Q |
410 |
taatcgatctcacatcaagtttg |
432 |
Q |
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| T |
7551653 |
tgatcgatctcacatcaagtttg |
7551675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 1134348 - 1134519
Alignment:
| Q |
13 |
gagatagtttatagcataagttggcattatttgaaatgctataattccaaatttacaaggtaggcattgacatccaaaacattctgatattgacttgcct |
112 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||| |||| | | || ||||||||||||||||||||||| | |||| ||||| | |||| |
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| T |
1134348 |
gagatagtttatagcatatgttggcattctttgaaatgctatcattcagagtatatgaggtaggcattgacatccaaaacgtactgacattgattggcct |
1134447 |
T |
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| Q |
113 |
atcagttcagcaatgatataagaatggtttactaaattgcgatgtatacaactatactttttgacatgcttt |
184 |
Q |
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| T |
1134448 |
ctcagttcagcaataatatacaaatggtttactaacttgcaatgtatacaacaatactttttgacttgcttt |
1134519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 272 - 432
Target Start/End: Original strand, 1134778 - 1134939
Alignment:
| Q |
272 |
cctgttttcctacaatagcaccttcctatgagttatgtttttaaaattgctacattttctcctttgggaacataacattgtatact-aacttttatagac |
370 |
Q |
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||||| |||||||| ||| | || |||||||||||||||| |||||||| || |||| || || |||||||||||| |||| | ||||||||||||| |
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| T |
1134778 |
cctgtattcctacagtagtatctccctatgagttatgtttgtaaaattgttatatttgacgctctgtgaacataacattctataattaacttttatagac |
1134877 |
T |
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| Q |
371 |
tttcgacattttggtttatccttgcaggaccatattttgtaatcgatctcacatcaagtttg |
432 |
Q |
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||| ||||||||||||| ||||| ||||| ||| |||||||||| ||||||||||||||||| |
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| T |
1134878 |
tttggacattttggtttttccttacaggaacattttttgtaatctatctcacatcaagtttg |
1134939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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