View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12870_low_2 (Length: 400)
Name: NF12870_low_2
Description: NF12870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12870_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 22134543 - 22134929
Alignment:
| Q |
1 |
tcaagggggaaatcaaataatagtttgctgttgtttatgacagctgggataactctatcattattcggcggcgtacggaggcattctatggatcagaata |
100 |
Q |
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| T |
22134543 |
tcaagggggaaatcaaataatagtttgctgttgtttatgacagctgggataactctatcattattcggcggcgtacggaggcattctatggatcagaata |
22134642 |
T |
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| Q |
101 |
aggttcctgtgagaggagacattcatgtcatagttgtaggtatgcttaatgtctttctttgcaattttgaatggaatcaaaccttcagaaatgnnnnnnn |
200 |
Q |
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| T |
22134643 |
aggttcctgtgagaggagacattcatgtcatagttgtaggtatgcttaatgtctttctttgcaattttgaatggaatcaaaccttcagaaatgttttttt |
22134742 |
T |
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| Q |
201 |
cttacggagaagtagatttatttgtataaaaaacactttcttcaattagaagtttgcaaaatggagacgggatataaatttacaaactggctgtattgcg |
300 |
Q |
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| T |
22134743 |
cttacggagaagtagatttatttgtataaaaaacactttcttcaattagaagtttgcaaaatggagacgggatataaatttacaaactggctgtattgcg |
22134842 |
T |
|
| Q |
301 |
atttctgttttctaggtgatcctggtctaggtaagagccagttgttacaagcagcagcagctgtttctccacgtggtatctatgtct |
387 |
Q |
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| T |
22134843 |
atttctgttttctaggtgatcctggtctaggtaagagccagttgttacaagcagcagcagctgtttctccacgtggtatctatgtct |
22134929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 40566799 - 40566413
Alignment:
| Q |
1 |
tcaagggggaaatcaaataatagtttgctgttgtttatgacagctgggataactctatcattattcggcggcgtacggaggcattctatggatcagaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40566799 |
tcaagggggaaatcaaataatagtttgctgttgtttatgacagctgggataactctatcattattcggcggcgtacggaggcattctatggatcagaata |
40566700 |
T |
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| Q |
101 |
aggttcctgtgagaggagacattcatgtcatagttgtaggtatgcttaatgtctttctttgcaattttgaatggaatcaaaccttcagaaatgnnnnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40566699 |
aggttcctgtgagaggagacattcatgtcatagttgtaggtatgcttaatgtctttctttgcaattttgaatggaatcaaaccttcagaaatgttttttt |
40566600 |
T |
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| Q |
201 |
cttacggagaagtagatttatttgtataaaaaacactttcttcaattagaagtttgcaaaatggagacgggatataaatttacaaactggctgtattgcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40566599 |
cttacggagaagtagatttatttgtataaaaaacactttcttcaattagaagtttgcaaaatggagacgggatataaatttacaaactggctgtattgcg |
40566500 |
T |
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| Q |
301 |
atttctgttttctaggtgatcctggtctaggtaagagccagttgttacaagcagcagcagctgtttctccacgtggtatctatgtct |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40566499 |
atttctgttttctaggtgatcctggtctaggtaagagccagttgttacaagcagcagcagctgtttctccacgtggtatctatgtct |
40566413 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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