View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12870_low_5 (Length: 276)
Name: NF12870_low_5
Description: NF12870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12870_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 7153388 - 7153644
Alignment:
| Q |
20 |
aaatacttgtagaattagtaataagcagagatttatgacttatattgactctagt----acaatacaaccaaacacaaagcaaccatatagctctcataa |
115 |
Q |
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| T |
7153388 |
aaatacttgtagagttagtaataagcagagatttatgacttatattgactatagtttatacaatacaaccaaacacaaagcaaccatatagctctcataa |
7153487 |
T |
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| Q |
116 |
caccttcaacaaa----atctaacatttcaattttctgaagatgagatctatgaccactttatattattctaattaaaaagcaaacacacatgtttctta |
211 |
Q |
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| T |
7153488 |
caccttcaacaaattaaatctaacatttcaattttctgaagatgagatctatgaccactttatattattctaattaaaaagcaaacacacatgtttctta |
7153587 |
T |
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| Q |
212 |
tacattaaatgtgtactcatacacacaaatacacacattggttccagtatctctgct |
268 |
Q |
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| T |
7153588 |
tacattaaatgtgtactcatacacacaaatacacacattggttccagtatctctgct |
7153644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 257
Target Start/End: Original strand, 7159548 - 7159729
Alignment:
| Q |
74 |
tacaatacaaccaaacacaaagcaaccatatagctctcataacaccttcaacaaaatct---aacatttcaattttctgaagatgagatctatgaccact |
170 |
Q |
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| T |
7159548 |
tacaagacaaccaaacacaaagcgatcata--gctctcataacaccttcaacaaaatctaagaacatttgaatttgatgaaggttagatccatgaccacc |
7159645 |
T |
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| Q |
171 |
ttatattattctaattaaaaagcaaacacacatgtttcttatacattaaatgtgtact--catacacacaaatacacacattggttcca |
257 |
Q |
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| T |
7159646 |
tcatattattcta---aaaaaggaa--acacatgcttcttatatattaaatgtgtactaatatacacacaattacacatattggttcca |
7159729 |
T |
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