View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_high_10 (Length: 481)
Name: NF12871_high_10
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Complemental strand, 39115979 - 39115535
Alignment:
| Q |
19 |
aattggccattacaattgtctactacaataacccctnnnnnnnngtgtaccacagtacattatgtcacacgttatatacaacatttttaaaatttcgaaa |
118 |
Q |
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| T |
39115979 |
aattggccattacaa--gtctactacaataacccctaaaaaaaagtgtactacagtacattatgtcacacgttatatacaacatttttaaaatttcgaaa |
39115882 |
T |
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| Q |
119 |
cgtaaatttgaaattacgtgtaattcaacaaatattctaatatattctttaagaaaaacaaatattttaacataatttaaactgaactatataatttcaa |
218 |
Q |
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| T |
39115881 |
cgtaaatttgaaattacgtctaattcaacaaatattctaatatattctttaagaaaaacaaatattttaacataatttaaactgaactatataatttcaa |
39115782 |
T |
|
| Q |
219 |
tctgccgcacttgaactaaattgaaacacttcaagattgaacagataaaagtctaaaaccatattcacaaaaataataaataataatttttctttaaata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39115781 |
tctgccgcacttgaactaaattgaaacacttcaagattgaacagataaaagtctaaaaccatattcacaaaaataataaataataatttttctttaaata |
39115682 |
T |
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| Q |
319 |
ggttgggttcgcaagttcactagtttaaattataagccaattgtctaaaccaaaccaatttgaatttggttcgatgggtttaatttagggttaattcaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39115681 |
ggttgggttcgcaagttcactagtttaaattataagccaattgtctaaaccaaaccaatttgaatttggttcgatgggtttaatttagggttaattcaaa |
39115582 |
T |
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| Q |
419 |
atatatatnnnnnnnnnctccggcttgggtttggtcatcgatttcatc |
466 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||| |
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| T |
39115581 |
atatatat-aaaaaaatctcgggcttgggtttggtcatcgatttcatc |
39115535 |
T |
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