View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12871_high_17 (Length: 407)
Name: NF12871_high_17
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 23 - 402
Target Start/End: Complemental strand, 47901169 - 47900786
Alignment:
| Q |
23 |
cacatctataggaaaggggtaaacaagtccaaataggtgtatttatatcaccaacaagaaaacaaccaaaccaaaagtgtttttgaaagccaagccaaaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47901169 |
cacatctataggaaaggggtaaacaagtccaaataggtgtatttatatcaccaacaagaaaacaaccaaaccaaaagtgtttttgaaagccaagccaaaa |
47901070 |
T |
|
| Q |
123 |
catatgata----atgatatgcaaatacgcaaaaccaaaaggacacaacagcaaaactggaaccccacgaatgattaaacaactcagcaaagcaactaac |
218 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47901069 |
catatgatatgatatgatatgcaaatacgcaaaaccaaaaggacacaacagcaaaactggaaccccacgaatgattaaacaactcagcaaagcaactaac |
47900970 |
T |
|
| Q |
219 |
actttcaattttcaaacaaaataacaacaacgcaaagattcgaatcttccgtttagaacattccatcacaagtaacaatctaacggttcaaaatccaact |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47900969 |
actttcaattttcaaacaaaataacaacaacgcaaagattcgaatcttccgtttagaacattccatcacaagtaacaatctaacggttcaaaatccaact |
47900870 |
T |
|
| Q |
319 |
aagcttcaacaaaaattccatagcattattccagcatcaccacaacattaaaacaaacgttgttcttgttaacttcttctctct |
402 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47900869 |
aagcttcaacaaaaattccatagcataattccagcatcaccacaacattaaaacaaacgttgttcttgctaacttcttctctct |
47900786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University