View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_high_2 (Length: 800)
Name: NF12871_high_2
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 678; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 7 - 785
Target Start/End: Original strand, 9378580 - 9379371
Alignment:
| Q |
7 |
agatgagaaaaaggaaaaataggtaatattcacaatgcacaggcggaagaaaattgtgtagcaggaccaataagttttggatataaagctagcaattgat |
106 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9378580 |
agatgggaaaaaggaaaaataggtaatattcacaatgcacaggtggaagaaaattgtgtagcaggaccaataagttttggatataaagctagcaattgat |
9378679 |
T |
|
| Q |
107 |
gagtttaatcttcccctcatgataagaactcaaataacttaaagccaatatatatagatacatgcatatcatcacaaggcaaagacac------------ |
194 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9378680 |
gagtttaatcttcccctcatgataagaactcaaataacttaaagccaatatatatagatacatgcatatcatcacaaggcaaagacacaaacacaaacac |
9378779 |
T |
|
| Q |
195 |
------aaacacaaacacactctctacctcaaaaaacattcctctccttcacatgatgtttgaattagaaaacatggaatatagccaatatagtagttat |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9378780 |
aaacacaaacacaaacacactctctacctcaaaaaacattcctctccttcacatgatgtttgaattagaaaacatggaatatagccaatatagtagttat |
9378879 |
T |
|
| Q |
289 |
tcagcagaagcaggagaagaagaaacatacacaactagttgcatatcttccatgagaaagaagaaaaacaagaatacaaagaggtttagtgatgaacaaa |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9378880 |
tcagcagaagcaggagaagaagaaacatacacaactagtagcatatcttccatgagaaagaagaaaaacaagaatacaaagaggtttactgatgaacaaa |
9378979 |
T |
|
| Q |
389 |
tcaaatcattggaaactatgtttgaggctgagacaagacttgaaccaagaaagaagttgcagttagctagagagcttggattgcagccaagacaagttgc |
488 |
Q |
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| T |
9378980 |
tcaaatcattggaaactatgtttgaaactgagacaagacttgaaccaagaaagaagttgcagttagctagagagcttggattgcagccaagacaagttgc |
9379079 |
T |
|
| Q |
489 |
tatatggtttcaaaacaaaagagctagatggaaatcaaagcaacttgaaagagaatacaacaaacttcaaaatagttacaataatttggcttcaaagttt |
588 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9379080 |
tatatggtttcaaaacaaaagagctagatggaaatcaaagcaacttgaaagagaatacaacaaacttcaaaatagttacaataatttggcttcaaagttt |
9379179 |
T |
|
| Q |
589 |
gaatctatgaagaaggaaagacaaacattactaatacaggtacttagtatagttcaattttaaattttaatccattttgaaatgttgataagatcttagg |
688 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9379180 |
gaatctatgaagaaggaaagacaaacattactaatacaggtacttagtatagttcaattttaaattttaatccattttgaaatgttgataagatcttagg |
9379279 |
T |
|
| Q |
689 |
cgaaattattattaataacggtgacacgacactctctcctctgatgttacaaagtcaatcttttatcactgagctgacacctgatgaacaagatagt |
785 |
Q |
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| T |
9379280 |
cgaaattattattaataacggt-----gacactctgtcccctgatgttacaaagtcaatctcttatcactgaactgacacctgatgaacaagatagt |
9379371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 446 - 521
Target Start/End: Complemental strand, 24692454 - 24692379
Alignment:
| Q |
446 |
tgcagttagctagagagcttggattgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaa |
521 |
Q |
| |
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||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||| |
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| T |
24692454 |
tgcagctagcaagagctcttggattgcagccaagacaaattgctatatggtttcaaaacagaagggctaggtggaa |
24692379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 8185709 - 8185779
Alignment:
| Q |
69 |
aggaccaataagttttggatataaagctagcaattga-tgagtttaatcttcccctcatgataagaactca |
138 |
Q |
| |
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| T |
8185709 |
aggaccaatgagttttggatataaagctagcaattgagggggttaaatctgatcctcatgataagaactca |
8185779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 37519798 - 37519843
Alignment:
| Q |
459 |
agagcttggattgcagccaagacaagttgctatatggtttcaaaac |
504 |
Q |
| |
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||||||||| ||||| ||||||||||||||| | |||||||||||| |
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| T |
37519798 |
agagcttggtttgcaaccaagacaagttgctgtttggtttcaaaac |
37519843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 430 - 527
Target Start/End: Complemental strand, 42087584 - 42087487
Alignment:
| Q |
430 |
gaaccaagaaagaagttgcagttagctagagagcttggattgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaa |
527 |
Q |
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| T |
42087584 |
gaaccaaggaagaagatgcaacttgcaagagatcttggtttgcagcctagacaagttgctatatggtttcagaacagaagagcaagatggaaatcaaa |
42087487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 480 - 555
Target Start/End: Original strand, 42401435 - 42401510
Alignment:
| Q |
480 |
acaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaagcaacttgaaagagaatacaacaaactt |
555 |
Q |
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||||||||||||||| ||||||||||| | ||||||| ||||| ||||||||||| |||||||| ||||||||||| |
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| T |
42401435 |
acaagttgctatatgttttcaaaacaagaaagctagaaggaaaccaaagcaacttaaaagagaaaacaacaaactt |
42401510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 469 - 536
Target Start/End: Complemental strand, 2342836 - 2342769
Alignment:
| Q |
469 |
ttgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaagcaacttga |
536 |
Q |
| |
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|||||||| |||||| |||||||||||||||| || | |||||| ||||| ||| ||||||||||||| |
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| T |
2342836 |
ttgcagcctagacaaattgctatatggtttcagaatagaagagcaagatgcaaaacaaagcaacttga |
2342769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 16763055 - 16763009
Alignment:
| Q |
459 |
agagcttggattgcagccaagacaagttgctatatggtttcaaaaca |
505 |
Q |
| |
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||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
16763055 |
agagcttggtttgcaaccaagacaagttgctatatggtttcaaaaca |
16763009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 530
Target Start/End: Complemental strand, 17181959 - 17181898
Alignment:
| Q |
469 |
ttgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaagca |
530 |
Q |
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||||| || |||||||||||||||||||||||||| | ||| || |||||||| ||||||| |
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| T |
17181959 |
ttgcaacctagacaagttgctatatggtttcaaaatagaagggcaagatggaagacaaagca |
17181898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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