View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_high_28 (Length: 257)
Name: NF12871_high_28
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 26122988 - 26123165
Alignment:
| Q |
18 |
agcaataaactaactagttgaatttgttaa---ttagttgggagtttgatagagctaacaattgtcaaattaatgagttgtggacatttattgaataata |
114 |
Q |
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| T |
26122988 |
agcaataaactaactagttgaatttgttaaaagttagttaggagtttgatagagctaacaattgtcaaattaatgagttgtggacatttattgaataata |
26123087 |
T |
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| Q |
115 |
agcaattgtgaatcg--nnnnnnnnnaggtttactcttccattttcttaactgaggagggttttggtcaacttttgaa |
190 |
Q |
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| T |
26123088 |
agcaattgtgaatcgtttttttttgtaggtttgctcttccattttcataactgaggagggttttggtcaacttttgaa |
26123165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 26132410 - 26132489
Alignment:
| Q |
48 |
ttagttgggagtttgatagagctaacaattgtcaaattaatgagttgtggacatttattgaataataagcaattgtgaat |
127 |
Q |
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| T |
26132410 |
ttagttaggagtttgttagagctaacaattgtcaaattaatgagttgttgacattttttgaatagcaaacaattgtgaat |
26132489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 26123210 - 26123239
Alignment:
| Q |
216 |
atttaaataagtgagtttttcatagaccta |
245 |
Q |
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| T |
26123210 |
atttaaataagtgagtttttcatagaccta |
26123239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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