View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12871_high_31 (Length: 237)
Name: NF12871_high_31
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_high_31 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0028 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 125913 - 125757
Alignment:
| Q |
1 |
gcttcaacttccgtaagggagggaaagcagggaaatccaacaaaagattttgaaaaggtgttttgaataaagcatatgtcacttgagttgtacttacact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
125913 |
gcttcaacttccgtaagggagggaaagcatggaaatccaacaaaagattttgaaaaggtgttttgaataaagcatatgtcacttcagttgtacttacact |
125814 |
T |
|
| Q |
101 |
tgctgagaaagagaaactctcttttcaaatcttctccttgcaaactcagttctacca |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
125813 |
tgctgagaaagagaaactctcttttcaaatcttctccttgcaaactcagttctacca |
125757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University