View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_high_4 (Length: 666)
Name: NF12871_high_4
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 38496873 - 38496403
Alignment:
| Q |
1 |
gagagatcataagaagaagtgatgtcccaaattattgaccaccacttatttgaggaggagaatcagatttccacacaaatggggttcattcctttcccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38496873 |
gagagatcataagaagaagtgatgtcccaaattattgaccaccacttatttgaggaggagaatcagatttccacacaaatggggttcattcctttcccaa |
38496774 |
T |
|
| Q |
101 |
caaaccttactttcccttctttagattgcaatcaatctttgaaagccttcagttccatagcttcttcacttacatctgaatcagattctacatcaaacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38496773 |
caaaccttactttcccttctttagattgcaatcaatctttgaaagccttcagttccatagcttcttcacttacatctgaatcagattctacatcaaacct |
38496674 |
T |
|
| Q |
201 |
aacacaaaccctactcacaaccaatcctcaaaaatcaaaagaatacctcacttctagctttggaggaagaagtactccattcctatccttgcatagatcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
38496673 |
aacacaaaccctactcacaaccaatcctcaaaaatcaaaagaatacctcacttctagctttggag---gaagtactccattcctatccttgcatggatcc |
38496577 |
T |
|
| Q |
301 |
attgtaaatccatggtgagacaaaaacagttcaattctcatatttgttttatcatgtatcgaaaaaggttattaaaaatgaaaattagagacggaaaaat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38496576 |
attgtaaatccatggtgagacaaaaacagttcaattctcatatttgttttatcatgtatcgaaaaaggttaataaaaatgaaaattagagacggaaaaat |
38496477 |
T |
|
| Q |
401 |
taatatttattggttaccatattttaccaaatttgatgtctccaacactcagagattacattagagacatattt |
474 |
Q |
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| T |
38496476 |
taatatttattggttaccatattttaccaaatttgatgtctccaacacttagagattacattagagacatattt |
38496403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 492 - 648
Target Start/End: Complemental strand, 38496377 - 38496223
Alignment:
| Q |
492 |
aaatttccgttgctacttcaatttgttttagctaattagttaattgactannnnnnnnctaatcttgctaaagagattgatatatcgatggtttgatgga |
591 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38496377 |
aaatttcctttgctacttcaatttgttttagctaattagttaattgactattttttt--taatcttgctaaagagattgatatatcgatggtttgatgga |
38496280 |
T |
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| Q |
592 |
tgttgtaaatttgtctcaatatagggcaatattgggaggagaagtaataagtaattg |
648 |
Q |
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| T |
38496279 |
tgttgtaaatttgtctcaatatagggcaatattgggaggagaagtaataagtaattg |
38496223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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