View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_high_6 (Length: 532)
Name: NF12871_high_6
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_high_6 |
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| [»] scaffold0571 (1 HSPs) |
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| [»] scaffold1191 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0571 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 113 - 498
Target Start/End: Original strand, 10204 - 10586
Alignment:
| Q |
113 |
gaagtaaaacttgaagtatgcttctgtgaaggattgacacatatacatacacacccacatttcttacagaaggcgtgtccgacaccggtatgccacaaca |
212 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||||||||| |
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| T |
10204 |
gaagtaaaacttgaagtatgcttctttgaaggattgacacatatacatacacatccacatttcttatagaaggcgtgtccggca------tgccacaaca |
10297 |
T |
|
| Q |
213 |
ctaacacatatga---ttacattcaattatttattttttcaaataattatcggtgagtataacaatgtgttattattggacactaacatgtgtcagagtc |
309 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10298 |
ctaacacatatgatgattacattcaattatttattttttcaaataattatcagtgagtataacaatgtgttattattggacactaacatgtgtcagagtc |
10397 |
T |
|
| Q |
310 |
agacaccaaacatggcttcaatttgtaattttgatgctacatagcaggcacctcacacaacacaaacattcacatgtagacatcggtactaatttgtgaa |
409 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10398 |
agacaccaaacatggcttcaatttgtaattttggtgctacatagcaggcacctcacacgacacaaacattcacatgtagacatcggtactaatttgtgaa |
10497 |
T |
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| Q |
410 |
aattgaagtgattgaatataactgtgtgcataactgttgtgtcaatattagactggcacgtgtcagatacacctttgatttgtagtgtc |
498 |
Q |
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| T |
10498 |
aattgaagtgattgaatataactgtgtgcataactgttgtgtcaatattagactggcacgtgtcagatacaccttggatttgtagtgtc |
10586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1191 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: scaffold1191
Description:
Target: scaffold1191; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 122 - 461
Target Start/End: Original strand, 2137 - 2476
Alignment:
| Q |
122 |
cttgaagtatgcttctgtgaaggattgacacatatacatacacacccacatttcttacagaaggcgtgtccgacaccggtatgccacaacactaacacat |
221 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||| |||||||||| || |||||||||||||||||||| |
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| T |
2137 |
cttgaagtatgcatctgtgaatgattgacacatatacatacacacccacatttctgatagaaggcatgtccgacactggcatgccacaacactaacacat |
2236 |
T |
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| Q |
222 |
atgattacattcaattatttattttttcaaataattatcggtgagtataacaatgtgttattattggacactaacatgtgtcagagtcagacaccaaaca |
321 |
Q |
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| T |
2237 |
atgattacattcaattatttattttttcaaataattatcagtgagtataacaatgtgttattattggacactaacatgtgtcagagtcagacaccaaaca |
2336 |
T |
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| Q |
322 |
tggcttcaatttgtaattttgatgctacatagcaggcacctcacacaacacaaacattcacatgtagacatcggtactaatttgtgaaaattgaagtgat |
421 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2337 |
tggcttcaatttgtaattttggtgctacatagcaggcacctcacacgacacaaacattcacatgtagacatcggtactaatttgtgaaaattgaagtgat |
2436 |
T |
|
| Q |
422 |
tgaatataactgtgtgcataactgttgtgtcaatattaga |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2437 |
tgaatataactgtgtgcataactgttgtgtcaatattaga |
2476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 282 - 532
Target Start/End: Original strand, 14398241 - 14398491
Alignment:
| Q |
282 |
ttattggacactaacatgtgtcagagtcagacaccaaacatggcttcaatttgtaattttgatgctacatagcaggcacctcacacaacacaaacattca |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
14398241 |
ttattggacactaacatgtgtcagagtcagacaccaaacatggcttcaatttgtaattttggtgctacatagcaggcacctcacacgacacaaacattca |
14398340 |
T |
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| Q |
382 |
catgtagacatcggtactaatttgtgaaaattgaagtgattgaatataactgtgtgcataactgttgtgtcaatattagactggcacgtgtcagatacac |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
14398341 |
catgtagacatcggtactaatttgtgaaaattgaagtgattgaatataactgtgtgcataactgctgtgtcaatattagactggcatgtgtcagatacac |
14398440 |
T |
|
| Q |
482 |
ctttgatttgtagtgtcggtgcaacatagatatacacacatgaattagtta |
532 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14398441 |
cttcaatttgtagtgtcggtgcaacatagatatacacacatgaattagtta |
14398491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 1921858 - 1921803
Alignment:
| Q |
206 |
cacaacactaacacatatgattacattcaattattt--attttttcaaataattat |
259 |
Q |
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||||||| |||||||| ||||||||||||||||| | |||||||||||||||||| |
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| T |
1921858 |
cacaacaataacacatgtgattacattcaattatgtgaattttttcaaataattat |
1921803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 427
Target Start/End: Original strand, 1116369 - 1116432
Alignment:
| Q |
364 |
acacaacacaaacattcacatgtagacatcggtactaatttgtgaaaattgaagtgattgaata |
427 |
Q |
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||||||||| ||| | |||||||||||| |||| ||||||| |||||||||||||||| |||| |
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| T |
1116369 |
acacaacactgacactaacatgtagacattggtaataatttgagaaaattgaagtgattaaata |
1116432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 23144098 - 23144130
Alignment:
| Q |
207 |
acaacactaacacatatgattacattcaattat |
239 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
23144098 |
acaacactaacacatatgattacattgaattat |
23144130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 23948449 - 23948398
Alignment:
| Q |
210 |
acactaacacatatgattacattcaatt-atttattttttcaaataattatc |
260 |
Q |
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||||| |||||||||||||||||||||| ||| |||||||||||| |||||| |
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| T |
23948449 |
acactgacacatatgattacattcaattaattgattttttcaaattattatc |
23948398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 12667969 - 12668019
Alignment:
| Q |
209 |
aacactaacacatatgattacattcaattat-ttattttttcaaataatta |
258 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
12667969 |
aacactaacacatgtgattacattcaattataccattttttcaaataatta |
12668019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 38749561 - 38749620
Alignment:
| Q |
206 |
cacaacactaacacatatgattacattcaattattt-attttttcaaataattatcggtg |
264 |
Q |
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|||||||| ||||||||| |||||||| |||||| | |||||||||||| |||||||||| |
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| T |
38749561 |
cacaacaccaacacatataattacattgaattatgtcattttttcaaattattatcggtg |
38749620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 18513239 - 18513298
Alignment:
| Q |
206 |
cacaacactaacacatatgattacattcaattat-ttattttttcaaataattatcggtg |
264 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| | ||||| |||||| |||||||||| |
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| T |
18513239 |
cacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtg |
18513298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 49345773 - 49345735
Alignment:
| Q |
222 |
atgattacattcaattat-ttattttttcaaataattat |
259 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| |
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| T |
49345773 |
atgattacattcaattatgttattttttcaaataattat |
49345735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 20120002 - 20119949
Alignment:
| Q |
210 |
acactaacacatatgattacattcaattattt-attttttcaaataattatcgg |
262 |
Q |
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|
|||||||||||| |||||||||| |||||||| ||||| |||||| |||||||| |
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| T |
20120002 |
acactaacacatgtgattacattaaattatttcattttctcaaattattatcgg |
20119949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 24445389 - 24445438
Alignment:
| Q |
215 |
aacacatatgattacattcaattatttattttttcaaataattatcggtg |
264 |
Q |
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||||||| |||||||||||||||| || |||||||||| |||||||||| |
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|
| T |
24445389 |
aacacatgtgattacattcaattactttatttttcaaattattatcggtg |
24445438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 35871188 - 35871237
Alignment:
| Q |
215 |
aacacatatgattacattcaattatttattttttcaaataattatcggtg |
264 |
Q |
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||||||| |||||||||||||||| || |||||||||| |||||||||| |
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| T |
35871188 |
aacacatgtgattacattcaattactttatttttcaaattattatcggtg |
35871237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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