View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12871_low_1 (Length: 824)

Name: NF12871_low_1
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12871_low_1
NF12871_low_1
[»] chr1 (2 HSPs)
chr1 (15-696)||(44973511-44974189)
chr1 (735-791)||(44973397-44973453)
[»] chr4 (4 HSPs)
chr4 (737-773)||(42096834-42096870)
chr4 (741-772)||(959084-959115)
chr4 (737-772)||(33648318-33648353)
chr4 (741-772)||(43635737-43635768)
[»] chr7 (2 HSPs)
chr7 (738-773)||(31756771-31756806)
chr7 (738-791)||(16862809-16862862)
[»] chr8 (2 HSPs)
chr8 (738-775)||(5995233-5995270)
chr8 (737-773)||(12750294-12750330)
[»] chr6 (1 HSPs)
chr6 (741-772)||(3607085-3607116)
[»] chr5 (3 HSPs)
chr5 (741-772)||(15398389-15398420)
chr5 (738-771)||(7599609-7599642)
chr5 (734-771)||(28228927-28228964)


Alignment Details
Target: chr1 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 15 - 696
Target Start/End: Complemental strand, 44974189 - 44973511
Alignment:
Q  15 cataggaagacatgcatcatgttgaggaacataagcagagagttttctgaatgtggaagggttagtgataggtgaagagttaagggaaagtgtaccactt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  44974189 cataggaagacatgcatcatgttgaggaacataagcagagagttttctgaatgtagaagggttagtgataggtgaagagttaagagaaagtgtaccactt 44974090  T
Q  115 aagggtaatcttctagctgaaagaatgtctagaagagttgattttcctgcaccacttggaccaacaatggcaagaatctcagaagggtatgctgtgaggg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44974089 aagggtaatcttctagctgaaagaatgtctagaagagttgattttcctgcaccacttggaccaacaatggcaagaatctcagaagggtatgctgtgaggg 44973990  T
Q  215 aaacatctttgaggatgtagtttnnnnnnnttggtgtacaatgtttgaagaagagaaatggtgcaatggaggagttgtttgtttgtaggtttttggagta 314  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||    
T  44973989 aaacatctttgaggatgtagtttgggggggttggtgtacaatgtttgaagaagagaaatggtgcaatgatggtgttgtttgtttgtaggtttttggagta 44973890  T
Q  315 agagattgaagttgctgttagtttgtatgtttttggtggaagtggtgatggttggttttccatagctaagggagagaagttggagtgaaattaaggtttt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973889 agagattgaagttgctgttagtttgtatgtttttggtggaagtggtgatggttggttttccatagctaagggagagaagttggagtgaaattaaggtttt 44973790  T
Q  415 ggtgggatggaacaatgagtgtttgtgtttccatgcgtt-ggaatgtataacgttggtgtggatgataaagagagacaaaaataaaggaataattaaaaa 513  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973789 ggtgggatggaacaatgagtgtttgtgtttccatgcgttgggagagtataacgttggtgtggatgataaagagagacaaaaataaaggaataattaaaaa 44973690  T
Q  514 tgttttgtaccttttggtggttgcattattatcctactatttttcctatcatggaattatactgtattacaagcaatcagcacttatatatatagtccgt 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  44973689 tgttttgtaccttttggtggttgcattattatcctactatttttcctatcatggaattatactgtattacaagcaatcagcact----tatatagtccgt 44973594  T
Q  614 gagccttttgtgtttataaatgcaaaaatgatatacattttatttaacaactcattattttcttgtatcatgcatacacccat 696  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973593 gagccttttgtgtttataaatgcaacaatcatatacattttatttaacaactcattattttcttgtatcatgcatacacccat 44973511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 735 - 791
Target Start/End: Complemental strand, 44973453 - 44973397
Alignment:
Q  735 agagagaattgctcttctcccatctatttttgctcattcatatttagaaatacacct 791  Q
    |||||||||||||||||||||||||||||||||| |||||| || | ||||||||||    
T  44973453 agagagaattgctcttctcccatctatttttgcttattcatgttaaaaaatacacct 44973397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 737 - 773
Target Start/End: Complemental strand, 42096870 - 42096834
Alignment:
Q  737 agagaattgctcttctcccatctatttttgctcattc 773  Q
    |||||||||||||||||||||||||||||||||||||    
T  42096870 agagaattgctcttctcccatctatttttgctcattc 42096834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 772
Target Start/End: Original strand, 959084 - 959115
Alignment:
Q  741 aattgctcttctcccatctatttttgctcatt 772  Q
    ||||||||||||||||||||||||||||||||    
T  959084 aattgctcttctcccatctatttttgctcatt 959115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 772
Target Start/End: Complemental strand, 33648353 - 33648318
Alignment:
Q  737 agagaattgctcttctcccatctatttttgctcatt 772  Q
    |||||||||||||||| |||||||||||||||||||    
T  33648353 agagaattgctcttctaccatctatttttgctcatt 33648318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 772
Target Start/End: Original strand, 43635737 - 43635768
Alignment:
Q  741 aattgctcttctcccatctatttttgctcatt 772  Q
    ||||||||||||||||||||||||||||||||    
T  43635737 aattgctcttctcccatctatttttgctcatt 43635768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 738 - 773
Target Start/End: Original strand, 31756771 - 31756806
Alignment:
Q  738 gagaattgctcttctcccatctatttttgctcattc 773  Q
    ||||||||||||||||||||||||||||||||||||    
T  31756771 gagaattgctcttctcccatctatttttgctcattc 31756806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 738 - 791
Target Start/End: Complemental strand, 16862862 - 16862809
Alignment:
Q  738 gagaattgctcttctcccatctatttttgctcattcatatttagaaatacacct 791  Q
    |||||||||| ||||||||||| |||||||||||||  ||  ||||||||||||    
T  16862862 gagaattgcttttctcccatctgtttttgctcattcccatcaagaaatacacct 16862809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 738 - 775
Target Start/End: Complemental strand, 5995270 - 5995233
Alignment:
Q  738 gagaattgctcttctcccatctatttttgctcattcat 775  Q
    |||||||||||||||||||||| |||||||||||||||    
T  5995270 gagaattgctcttctcccatctttttttgctcattcat 5995233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 737 - 773
Target Start/End: Complemental strand, 12750330 - 12750294
Alignment:
Q  737 agagaattgctcttctcccatctatttttgctcattc 773  Q
    ||||||||||||||||||||||| |||||||||||||    
T  12750330 agagaattgctcttctcccatctgtttttgctcattc 12750294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 772
Target Start/End: Complemental strand, 3607116 - 3607085
Alignment:
Q  741 aattgctcttctcccatctatttttgctcatt 772  Q
    ||||||||||||||||||||||||||||||||    
T  3607116 aattgctcttctcccatctatttttgctcatt 3607085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 772
Target Start/End: Complemental strand, 15398420 - 15398389
Alignment:
Q  741 aattgctcttctcccatctatttttgctcatt 772  Q
    ||||||||||||||||||||||||||||||||    
T  15398420 aattgctcttctcccatctatttttgctcatt 15398389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 738 - 771
Target Start/End: Original strand, 7599609 - 7599642
Alignment:
Q  738 gagaattgctcttctcccatctatttttgctcat 771  Q
    ||||||||||||||| ||||||||||||||||||    
T  7599609 gagaattgctcttcttccatctatttttgctcat 7599642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 734 - 771
Target Start/End: Complemental strand, 28228964 - 28228927
Alignment:
Q  734 aagagagaattgctcttctcccatctatttttgctcat 771  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  28228964 aagagagaattgctcttctcccatctgtttttgttcat 28228927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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