View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_12 (Length: 453)
Name: NF12871_low_12
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 44283849 - 44284278
Alignment:
| Q |
18 |
gtaccttgggacttgctatgttgcatatatgtgcaatgtgatagtgtaccatgtccatatacgaataatgcaaaatggggtccaactcccactccatgta |
117 |
Q |
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| T |
44283849 |
gtaccttgggacttgctatgttgcatatatgtgcaatgtgatagtgtaccatgtccatatacgaataatgcaaaatggggtccaactcccactccatgta |
44283948 |
T |
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| Q |
118 |
tatgtatttgattatattagatataatcagaaccgtctaaaatattttgaagatcatattcttgttttaagatttcaagttttagatattgaaattggta |
217 |
Q |
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| T |
44283949 |
tatgtatttgattatattagatataatcagaaccgtctaaaatattttgaagatcatattcttgttttaagatttcaagttttagatattgaaattggta |
44284048 |
T |
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| Q |
218 |
attaaaactcataaaaattggtatatacgtgaattagatcgttaaacactttcgaggtcgaggtcctgaaaatttgagatttattgatataattagattt |
317 |
Q |
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| T |
44284049 |
attaaaactcataaaaattggtatatacgtgaattagatcgttaaacactttcgaggtcgaggtcctgaaaatttgagatttattgatataattagattt |
44284148 |
T |
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| Q |
318 |
agaatttcatattctgctcttggttttatttcataaaagggaaattagaccagcattataaaataactgttgcatgagattctaattactctctctgttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44284149 |
agaatttcatattctgctcttggttttatttcataaaagggaaattagaccagcattataaaataactgttgcatgagattctaattactctctctgttt |
44284248 |
T |
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| Q |
418 |
catattaaatgatttatttgttcatctcac |
447 |
Q |
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| T |
44284249 |
catattaaatgatttatttgttcatttcac |
44284278 |
T |
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