View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_14 (Length: 450)
Name: NF12871_low_14
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Original strand, 36016757 - 36017179
Alignment:
| Q |
11 |
catagggtaactacccaaaactctcaagaaagacgtgaattcctgaacttcagccaacgcgttttgtgctctaacttcagccattgaagcttcaaaatca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36016757 |
catagggtaactacccaaaactctcaagaaagacgtgaattcctgaacttcagccaacgcgttttgtgctctaacttcagccattgaagcttcaaaatca |
36016856 |
T |
|
| Q |
111 |
acataaaacaaatactcaaaatgcttcgcagttccaacatttgcatcatcaacaagcctaatcggacggttacgatgtggccttgattcaatcttcgtta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36016857 |
acataaaacaaatactcaaaatgcttcgcagttccaacatttgcatcatcaacaagcctaatcggacggttacgatgtggccttgattcaatcttcgtta |
36016956 |
T |
|
| Q |
211 |
aactaatattcctaaacgcaaaagctgaaagcactttgaaaagcaccgaagttcctttatcatgagcgaaaacaatacttgttttaaatggacgatccgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36016957 |
aactaatattcctaaacgcaaaagctgaaagcactttgaaaagcactgaagttcctttatcatgagcgaaaacaatacttgttttaaatggacgatccgt |
36017056 |
T |
|
| Q |
311 |
acgtggaattatgggttctcgggccaacataacgaatcgggttacgttacttgggtcatcttgaattccatctgctaagatatttaatccataaagctcg |
410 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36017057 |
acgtggaattatgggttctctggccaacataacgaatcgggttacgttacttgggtcatcttgaattccatctgctaagatatttaatccataaagctcg |
36017156 |
T |
|
| Q |
411 |
gctgcacgtgcgctggcgatagc |
433 |
Q |
| |
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| T |
36017157 |
gctgcacgtgcgctggcgatagc |
36017179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 20138231 - 20137809
Alignment:
| Q |
11 |
catagggtaactacccaaaactctcaagaaagacgtgaattcctgaacttcagccaacgcgttttgtgctctaacttcagccattgaagcttcaaaatca |
110 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| || || || ||||||||||| | || |||||||| ||||| |||||||| ||||| ||||||||| |
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| T |
20138231 |
cataggataactccccaaaactcttaagaaagatgtaaactcttgaacttcagcaagtgcattttgtgccctaacctcagccatagaagcctcaaaatca |
20138132 |
T |
|
| Q |
111 |
acataaaacaaatactcaaaatgcttcgcagttccaacatttgcatcatcaacaagcctaatcggacggttacgatgtggccttgattcaatcttcgtta |
210 |
Q |
| |
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| |||||||| |||||||||||| || || ||||| || || ||||||| |||| | |||||||||| |||||| ||||| ||||||||||| |||| |
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| T |
20138131 |
atataaaacatatactcaaaatgtttagctgttccttcactttcatcatccacaactcgaatcggacggccacgatgaggcctagattcaatcttagtta |
20138032 |
T |
|
| Q |
211 |
aactaatattcctaaacgcaaaagctgaaagcactttgaaaagcaccgaagttcctttatcatgagcgaaaacaatacttgttttaaatggacgatccgt |
310 |
Q |
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| || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||| || |
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| T |
20138031 |
agctgatattcctaaacgcaaaagctgaaagcactttaaaaagcactgaagttcctttatcatgagcaaaaacaatacttgttttgaaaggacgatcggt |
20137932 |
T |
|
| Q |
311 |
acgtggaattatgggttctcgggccaacataacgaatcgggttacgttacttgggtcatcttgaattccatctgctaagatatttaatccataaagctcg |
410 |
Q |
| |
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| |||||| |||||||||| ||||||||||| || || || |||||| |||| |||||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
20137931 |
tcttggaataatgggttctcttgccaacataacaaaccgtgtcacgttatttggatcatcttgtattccatcagctaagatatttaatccgtaaagctct |
20137832 |
T |
|
| Q |
411 |
gctgcacgtgcgctggcgatagc |
433 |
Q |
| |
|
|| || ||||||||||||||||| |
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|
| T |
20137831 |
gcagcgcgtgcgctggcgatagc |
20137809 |
T |
|
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