View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_15 (Length: 447)
Name: NF12871_low_15
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 34142181 - 34142599
Alignment:
| Q |
18 |
caaacctacaacaataaacccaattctcccgttaaatattttaggacgtccccagaacactaggctcctgtgcagccttatctctgctattgaagaagct |
117 |
Q |
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| T |
34142181 |
caaacctacaacaataaacccaattctcccgttaaatattttaggacgtccccagaacactaggctcctatgcagccttatctctgctattgaagaagct |
34142280 |
T |
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| Q |
118 |
gttttcaggattcaaatttgtgacctatgtaaatagataagacatgaattgagtttataaacggcgacacttctcacttaatataaaaatgtattaacct |
217 |
Q |
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| T |
34142281 |
gttttcaggattcaaatttgtgacctatgtaaatagataagacatgaattgagtttataaacggcgacacttctcacttaatataaaaatttaataacct |
34142380 |
T |
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| Q |
218 |
tcacgtcacaaggcaacgaacgaccttagcgtcatgctatggctcaccctctaattaaggggttatattaagaaaatcataaaattggaagacaacaaag |
317 |
Q |
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| T |
34142381 |
tcacgtcgcaaggcaacgaacgaccttagcgtcatgctatggctcaccctctaattaaggggttatattaagaaaatcataaaattggaagacaacaaag |
34142480 |
T |
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| Q |
318 |
acaacatttattaggtcaaaagtccataaaactataatgttttggtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttcaca |
417 |
Q |
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| T |
34142481 |
acaacatttattaggtcaaaagtccataaaactataatg-tttggtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttcaca |
34142579 |
T |
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| Q |
418 |
ag-acccactgttgatctgt |
436 |
Q |
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| T |
34142580 |
agaacccactgttgatctgt |
34142599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 34131029 - 34131087
Alignment:
| Q |
362 |
gtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttcacaaga |
420 |
Q |
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| T |
34131029 |
gtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaaga |
34131087 |
T |
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