View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12871_low_16 (Length: 429)
Name: NF12871_low_16
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_16 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 134464 - 134876
Alignment:
| Q |
17 |
agagacgtttaaagatatggacgaagagcttcttggctacatcaaaagagtaacacaccttgacattgtaaactgtcacaagctattgaattgcatccca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
134464 |
agagacgtttaaagatatggacgaagagcttcttggctacatcaaaagagtaacacaccttgacattgtaaactgtcacaagctattgaattgcatccca |
134563 |
T |
|
| Q |
117 |
tccaacatgatgcacttattctcacatttggagaaactctctgttaatgaatgtgagtacttagaagagatatttgaatcaactgatagcatgttgcagt |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
134564 |
tccaacatgatgcacttattatcacatttggagaaactctctgttaatgaatgtgagtacttagaagagatatttgaatcaactgatagcatgttgcagt |
134663 |
T |
|
| Q |
217 |
gggagctattgttcttaatattgaagtctcttccaaaactgaagcacatttggaaaaaccattgtcaaggatttgagtgtttacaaatgataatcatcta |
316 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
134664 |
gggagctagtgttcttaaaattgctttctcttccaaaactgaagcacatttggaaaaaccattgtcaaggattcgattgtttacaattgataatcatcta |
134763 |
T |
|
| Q |
317 |
taagtgcaatgatttggaatatgttcttccggatgtttccgtgctcacaagcattccaaatttgtcgtcaattgatgtgtatgaatgccagaagatgaag |
416 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
134764 |
tgagtgcaatgatttggaatatgttcttccggatgtttccgtgctcacaagcattccaaatttgtggttaattggtgtgtatgaatgccagaagatgaag |
134863 |
T |
|
| Q |
417 |
gagatcattggga |
429 |
Q |
| |
|
||||||||||||| |
|
|
| T |
134864 |
gagatcattggga |
134876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 74 - 429
Target Start/End: Original strand, 157035 - 157394
Alignment:
| Q |
74 |
ccttgacattgtaaactgtcacaagctattgaattgcatcccatccaacatgatgcacttattctcacatttggagaaactctctgttaatgaatgtgag |
173 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | ||| | |||||||||| |
|
|
| T |
157035 |
ccttgacattgtaaactttcacaagctattgaattgcatcccatccaacatgatgcacttattctcacatttgaaggaactatttgtgattgaatgtgag |
157134 |
T |
|
| Q |
174 |
tacttagaagagatatttgaatcaactgatagcatgttgcagtgggagctattgttcttaatattgaagtctcttccaaaactgaagcacatttggaaaa |
273 |
Q |
| |
|
| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
157135 |
tgcttagaagagatatttaaatcaaccgatcgcatgttgcagtgggagctattgttcttaaaattgttttctcttccaaaactgaagcacatttggaaaa |
157234 |
T |
|
| Q |
274 |
acc----attgtcaaggatttgagtgtttacaaatgataatcatctataagtgcaatgatttggaatatgttcttccggatgtttccgtgctcacaagca |
369 |
Q |
| |
|
| | ||||||||||||| ||||||||| || || |||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
157235 |
atcattaattgtcaaggattcgagtgtttagaattgttaatcatcaaggactgcaatgatttggaatatgttcttctggatgtttccgtgctcacaagca |
157334 |
T |
|
| Q |
370 |
ttccaaatttgtcgtcaattgatgtgtatgaatgccagaagatgaaggagatcattggga |
429 |
Q |
| |
|
|||||||||||| || || | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
157335 |
ttccaaatttgtggtttatcggtgtgtatgaatgccagaagatgaaggagatcattggga |
157394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 34376968 - 34377386
Alignment:
| Q |
17 |
agagacgtttaaagatatggacgaagagcttcttggctacatcaaaagagtaacacaccttgacattgtaaactgtcacaagctattgaattgcatccca |
116 |
Q |
| |
|
|||||| |||| ||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34376968 |
agagacatttagagatatggatgaagagcttcttggctacatcaaaagagtaatagtgcttgagattgtaaactgtcataagctattgaattgcatccca |
34377067 |
T |
|
| Q |
117 |
tccaacatgatgcacttattctcacatttggagaaactctctgttaatgaatgtgagtacttagaagagatatttgaatcaactgatagcatgttgcagt |
216 |
Q |
| |
|
|||||||||||||| |||||||||||| || || || | || || |||||||||| ||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
34377068 |
tccaacatgatgcaattattctcacatgtgaagtctctaacagtgaaagaatgtgagtgcttagtagagatatttgaatcaaatgatagcatcttgcagt |
34377167 |
T |
|
| Q |
217 |
gggagctattgttcttaatattgaagtctcttccaaaactgaagcacatttggaaaaaccattgtca------aggatttgagtgtttacaaatgataat |
310 |
Q |
| |
|
| || ||| | |||||| ||| | | ||||||||||||||||||||| |||||||| ||| |||| | | || | || ||||||| ||||| |
|
|
| T |
34377168 |
gtgaactagaggtcttaaatttgtattgtcttccaaaactgaagcacatctggaaaaatcatggtcaaactttaaggttcgggtatttacaagagataag |
34377267 |
T |
|
| Q |
311 |
catctataagtgcaatgatttggaatatgttcttccggatgtttccgtgctcacaagcattccaaatttgtcgtcaattgatgtgtatgaatgccagaag |
410 |
Q |
| |
|
||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| |||| ||| ||| |||||| ||||||| ||||| |
|
|
| T |
34377268 |
gatcaagaagtgcaatgatttggaatatgtgattccggatgtttccgtggtcacaagccttccaagtttgatgtcgattcatgtgtctgaatgcgagaag |
34377367 |
T |
|
| Q |
411 |
atgaaggagatcattggga |
429 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
34377368 |
atgaaggagatcattggga |
34377386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 34550418 - 34549998
Alignment:
| Q |
17 |
agagacgtttaaagatatggacgaagagcttcttggctacatcaaaagagtaacacaccttgacattgtaaactgtcacaagctattgaattgcatccca |
116 |
Q |
| |
|
|||||| |||| |||||| || ||||||||| ||||||||||||||||||||||| | |||||||||||||| | | ||||||||||||||||||| ||| |
|
|
| T |
34550418 |
agagacatttagagatatagatgaagagcttgttggctacatcaaaagagtaacaaatcttgacattgtaaagtttaacaagctattgaattgcattcca |
34550319 |
T |
|
| Q |
117 |
tccaacatgatgcacttattctcacatttggagaaactctctgttaatgaatgtgagtacttagaagagatatttgaatcaactgatagcatgttgcagt |
216 |
Q |
| |
|
|||||||||||||| |||||||||||| || || || | || || |||||||||| ||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
34550318 |
tccaacatgatgcaattattctcacatgtgaagtctctaacagtgaaagaatgtgagtgcttagtagagatatttgaatcaaatgatagcatcttgcagt |
34550219 |
T |
|
| Q |
217 |
gggagctattgttctt---aat---attgaagtctcttccaaaactgaagcacatttggaaaaaccattgtca------aggatttgagtgtttacaaat |
304 |
Q |
| |
|
| || ||| | |||| ||| |||| ||||||||||||||||||||||| |||||||| ||| |||| | | || | ||||||| || |
|
|
| T |
34550218 |
gtgaactagaggtcttagaaatagaattgttttctcttccaaaactgaagcacatatggaaaaatcatggtcaaactttaaggttcgggtgtttagaaga |
34550119 |
T |
|
| Q |
305 |
gataatcatctataagtgcaatgatttggaatatgttcttccggatgtttccgtgctcacaagcattccaaatttgtcgtcaattgatgtgtatgaatgc |
404 |
Q |
| |
|
||||| ||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| |||| ||| ||| ||||| ||||||| |
|
|
| T |
34550118 |
gataaggatcaagaagtgcaatgatttggaatatgtgattccggatgtttccgtggtcacaagccttccaagtttggtgtcgattcgtgtgtctgaatgc |
34550019 |
T |
|
| Q |
405 |
cagaagatgaaggagatcatt |
425 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34550018 |
gagaagatgaaggagatcatt |
34549998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 15891246 - 15891058
Alignment:
| Q |
17 |
agagacgtttaaagatatggacgaagagcttcttggctacatcaaaagagtaacacaccttgacattgtaaactgtcacaagctattgaattgcatccca |
116 |
Q |
| |
|
|||||| |||| |||||| | ||||||||| ||| |||||||| |||||||||| | | |||||| ||| ||||||||||| |||| |||||||||| |
|
|
| T |
15891246 |
agagacatttagagatatcaatgaagagcttgttgcctacatcagaagagtaacaaagatcgacattaaaaagtgtcacaagctgttgagttgcatccca |
15891147 |
T |
|
| Q |
117 |
tccaacatgatgcacttattctcacatttggagaaactctctgttaatgaatgtgagtacttagaagagatatttgaatcaactgatag |
205 |
Q |
| |
|
| |||| ||||||||||||||||||| || ||| ||| ||| ||||||| | ||||||||||||||||||||||| |||||| |
|
|
| T |
15891146 |
gcgaacaagatgcacttattctcacatatgcagattctcaatgtgcgagaatgtgggggcttagaagagatatttgaatcaaatgatag |
15891058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University