View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_18 (Length: 414)
Name: NF12871_low_18
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 20920789 - 20921195
Alignment:
| Q |
1 |
caaagtagatccaaatttattcatatccgtcacggcatgccaaactccaagtgggtaacttaataatgaatgaatggtttggttaattatgacatttggg |
100 |
Q |
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| T |
20920789 |
caaagtagatccaaatttattcatatccgtcacggcatgccaaactccaagtgggtaacttaataatgaatgaatggtttggttaattatgacatttggg |
20920888 |
T |
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| Q |
101 |
tcaacacactctatagtctatactaactatagagactaattaagcaagctaagcaattgatttaatgagtgtaatgaaattcatttaactttagtaatga |
200 |
Q |
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| T |
20920889 |
tcaacacactctata-------ctaactatagagattaattaagcaagctaagcaattgatttaatgagtgtaatgaaattcatttaactttagtaatga |
20920981 |
T |
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| Q |
201 |
aaatagaattaaaaaaccggccaatgcctacannnnnnnggggttacaaacttacaagtagggacaagaaagccacatagtaaaccaactcatgcatttg |
300 |
Q |
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| T |
20920982 |
aaatagaattaaaaaaccggccaatgcctacatttttttggggttacaaacttacaagtagggacaagaaagccacatagtaaaccaactcatgcatttg |
20921081 |
T |
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| Q |
301 |
aggcatttgtctctatcaacaaacttggaaccaaacacacttctcgtccaaccgaaagggataataacaactatacatagataacacaatgtatatactt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20921082 |
aggcatttgtctctatcaacaaacttggaaccaaacacacttctcgtccaaccgaaagggataataacaactatacatagataacacaatgtatatactt |
20921181 |
T |
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| Q |
401 |
gactaactttagtt |
414 |
Q |
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|||||||||||||| |
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| T |
20921182 |
gactaactttagtt |
20921195 |
T |
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