View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12871_low_20 (Length: 382)

Name: NF12871_low_20
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12871_low_20
NF12871_low_20
[»] chr1 (30 HSPs)
chr1 (27-382)||(34698100-34698453)
chr1 (148-309)||(34681590-34681751)
chr1 (19-81)||(18179325-18179387)
chr1 (19-79)||(18003813-18003873)
chr1 (19-81)||(25819181-25819244)
chr1 (19-81)||(52833142-52833205)
chr1 (19-65)||(7713002-7713048)
chr1 (19-81)||(9768845-9768907)
chr1 (19-81)||(9931084-9931146)
chr1 (19-81)||(52961118-52961180)
chr1 (19-64)||(1580826-1580871)
chr1 (19-79)||(40678819-40678880)
chr1 (25-66)||(47141857-47141898)
chr1 (19-81)||(2052718-2052781)
chr1 (26-81)||(3341772-3341827)
chr1 (23-66)||(4605893-4605936)
chr1 (19-81)||(17350057-17350120)
chr1 (19-81)||(29491466-29491529)
chr1 (19-81)||(39238712-39238775)
chr1 (19-81)||(47763421-47763484)
chr1 (32-66)||(9074006-9074040)
chr1 (23-81)||(9769616-9769674)
chr1 (19-81)||(42908768-42908830)
chr1 (21-66)||(4288587-4288632)
chr1 (20-81)||(8984513-8984574)
chr1 (21-66)||(9004345-9004390)
chr1 (20-81)||(24168615-24168676)
chr1 (21-81)||(25270197-25270257)
chr1 (22-66)||(43020611-43020655)
chr1 (29-81)||(50199512-50199564)
[»] chr3 (27 HSPs)
chr3 (19-66)||(6951841-6951888)
chr3 (19-66)||(24130556-24130603)
chr3 (19-81)||(26583098-26583160)
chr3 (19-81)||(9624979-9625042)
chr3 (19-81)||(14868681-14868744)
chr3 (19-81)||(27183717-27183780)
chr3 (22-81)||(31108796-31108855)
chr3 (19-81)||(52030117-52030180)
chr3 (20-62)||(3461779-3461821)
chr3 (19-81)||(16874226-16874288)
chr3 (19-61)||(16893501-16893543)
chr3 (19-62)||(44976570-44976614)
chr3 (19-81)||(7448399-7448462)
chr3 (19-81)||(7456541-7456604)
chr3 (19-66)||(12236596-12236643)
chr3 (18-81)||(21249026-21249088)
chr3 (19-81)||(11668305-11668367)
chr3 (19-81)||(19137616-19137678)
chr3 (20-66)||(28951864-28951910)
chr3 (19-61)||(38507645-38507687)
chr3 (19-61)||(40956743-40956785)
chr3 (21-62)||(19149423-19149464)
chr3 (19-64)||(41430834-41430879)
chr3 (19-66)||(3955302-3955350)
chr3 (22-66)||(3993758-3993802)
chr3 (21-81)||(24160564-24160624)
chr3 (19-66)||(47191369-47191417)
[»] chr4 (29 HSPs)
chr4 (19-81)||(41492534-41492596)
chr4 (19-81)||(27921893-27921955)
chr4 (19-81)||(49039481-49039543)
chr4 (20-81)||(48991902-48991963)
chr4 (19-66)||(12796663-12796710)
chr4 (22-81)||(20610739-20610798)
chr4 (19-81)||(28520767-28520830)
chr4 (23-65)||(17431378-17431420)
chr4 (19-81)||(54854215-54854277)
chr4 (21-77)||(4419726-4419782)
chr4 (22-81)||(56896-56955)
chr4 (19-81)||(9692958-9693021)
chr4 (19-81)||(14149789-14149852)
chr4 (19-81)||(36008271-36008334)
chr4 (19-66)||(43049984-43050031)
chr4 (19-81)||(48968246-48968309)
chr4 (19-81)||(53815692-53815755)
chr4 (19-65)||(3465898-3465944)
chr4 (19-65)||(8241425-8241471)
chr4 (19-81)||(20166313-20166375)
chr4 (19-81)||(32887128-32887190)
chr4 (19-81)||(33944399-33944461)
chr4 (19-81)||(36257691-36257753)
chr4 (19-81)||(46482853-46482915)
chr4 (19-64)||(33359814-33359859)
chr4 (28-81)||(42432014-42432067)
chr4 (21-66)||(49319392-49319437)
chr4 (19-66)||(2565257-2565305)
chr4 (22-66)||(36045830-36045874)
[»] chr8 (22 HSPs)
chr8 (19-81)||(2696529-2696592)
chr8 (19-66)||(7345425-7345472)
chr8 (19-62)||(25408751-25408794)
chr8 (19-81)||(2800015-2800078)
chr8 (19-66)||(18577110-18577157)
chr8 (19-81)||(21133555-21133618)
chr8 (22-81)||(26657856-26657915)
chr8 (19-65)||(216199-216245)
chr8 (19-65)||(692759-692805)
chr8 (19-65)||(696968-697014)
chr8 (19-65)||(729822-729868)
chr8 (19-65)||(853717-853763)
chr8 (20-81)||(7314730-7314792)
chr8 (19-61)||(25470902-25470944)
chr8 (22-66)||(17467278-17467322)
chr8 (19-66)||(38790624-38790672)
chr8 (19-66)||(6325268-6325314)
chr8 (23-66)||(16808412-16808455)
chr8 (19-81)||(8034527-8034589)
chr8 (19-81)||(41793009-41793070)
chr8 (22-81)||(1588766-1588826)
chr8 (19-66)||(10292348-10292396)
[»] chr5 (22 HSPs)
chr5 (19-81)||(6447516-6447579)
chr5 (21-67)||(22867042-22867088)
chr5 (19-80)||(34325262-34325323)
chr5 (19-66)||(5932069-5932116)
chr5 (19-66)||(35813293-35813340)
chr5 (19-66)||(38361482-38361529)
chr5 (19-81)||(3535972-3536034)
chr5 (19-81)||(28537132-28537194)
chr5 (21-81)||(4674851-4674912)
chr5 (22-81)||(1463870-1463930)
chr5 (27-66)||(33756310-33756349)
chr5 (19-81)||(37417165-37417228)
chr5 (19-61)||(1345386-1345428)
chr5 (19-81)||(7147055-7147117)
chr5 (20-66)||(11246545-11246591)
chr5 (20-66)||(20186864-20186910)
chr5 (19-81)||(25660909-25660971)
chr5 (19-81)||(33800890-33800952)
chr5 (19-81)||(36742003-36742065)
chr5 (19-81)||(40250213-40250275)
chr5 (19-60)||(30119955-30119996)
chr5 (19-75)||(9176828-9176884)
[»] chr2 (16 HSPs)
chr2 (19-81)||(21970475-21970538)
chr2 (19-81)||(34034347-34034409)
chr2 (19-81)||(39334917-39334979)
chr2 (22-66)||(20684271-20684315)
chr2 (28-66)||(40471159-40471197)
chr2 (19-81)||(29034972-29035035)
chr2 (21-64)||(38581658-38581701)
chr2 (19-66)||(38807878-38807925)
chr2 (20-66)||(2057479-2057525)
chr2 (19-81)||(32288373-32288435)
chr2 (20-82)||(41288075-41288136)
chr2 (19-81)||(44487803-44487865)
chr2 (32-81)||(37884844-37884893)
chr2 (21-66)||(39118392-39118437)
chr2 (21-61)||(17223454-17223493)
chr2 (21-65)||(19352865-19352909)
[»] scaffold1808 (1 HSPs)
scaffold1808 (19-65)||(885-931)
[»] chr7 (22 HSPs)
chr7 (19-81)||(7465463-7465525)
chr7 (19-81)||(35195840-35195902)
chr7 (19-66)||(35498395-35498442)
chr7 (19-81)||(38032891-38032953)
chr7 (19-81)||(45267962-45268024)
chr7 (19-66)||(8766862-8766909)
chr7 (19-81)||(21285389-21285452)
chr7 (19-81)||(31475876-31475939)
chr7 (23-66)||(32534636-32534679)
chr7 (23-66)||(34693819-34693862)
chr7 (22-80)||(38451862-38451921)
chr7 (22-81)||(44409201-44409260)
chr7 (20-62)||(3246541-3246583)
chr7 (19-81)||(3481204-3481266)
chr7 (19-81)||(27726405-27726467)
chr7 (20-66)||(32814825-32814871)
chr7 (19-80)||(41139083-41139145)
chr7 (21-62)||(48088629-48088670)
chr7 (19-66)||(14818416-14818464)
chr7 (19-66)||(15265414-15265462)
chr7 (20-64)||(17305443-17305487)
chr7 (21-81)||(47355808-47355868)
[»] chr6 (19 HSPs)
chr6 (23-65)||(14948836-14948878)
chr6 (19-80)||(31411098-31411159)
chr6 (19-79)||(34524872-34524932)
chr6 (19-81)||(9064862-9064925)
chr6 (19-81)||(14981738-14981801)
chr6 (19-81)||(8175993-8176055)
chr6 (19-81)||(9422830-9422892)
chr6 (19-81)||(31639138-31639200)
chr6 (19-62)||(12341418-12341461)
chr6 (19-66)||(17305513-17305560)
chr6 (19-66)||(22730753-22730800)
chr6 (19-81)||(10455739-10455801)
chr6 (23-65)||(14949072-14949114)
chr6 (19-81)||(24256913-24256975)
chr6 (20-66)||(30668235-30668281)
chr6 (21-62)||(3029965-3030006)
chr6 (19-64)||(19135926-19135971)
chr6 (25-66)||(20858434-20858475)
chr6 (27-71)||(17176154-17176198)
[»] scaffold0168 (1 HSPs)
scaffold0168 (19-80)||(34070-34131)
[»] scaffold0308 (1 HSPs)
scaffold0308 (19-81)||(7072-7135)
[»] scaffold0036 (1 HSPs)
scaffold0036 (19-81)||(25022-25085)
[»] scaffold0712 (1 HSPs)
scaffold0712 (20-66)||(4518-4564)
[»] scaffold0709 (1 HSPs)
scaffold0709 (20-66)||(4538-4584)
[»] scaffold0809 (1 HSPs)
scaffold0809 (19-66)||(4856-4904)
[»] scaffold0247 (1 HSPs)
scaffold0247 (33-81)||(20734-20782)
[»] scaffold0178 (1 HSPs)
scaffold0178 (21-81)||(4322-4382)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 27 - 382
Target Start/End: Original strand, 34698100 - 34698453
Alignment:
Q  27 cataactcagttgacagggacatacattattatatgcaggaaccggggttcgaacggacacccgtattaaggaaagttggatgtccaaacaacatttctg 126  Q
    |||| |||||||||||||||||| |||||||||||| ||| ||| |||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||    
T  34698100 catagctcagttgacagggacatgcattattatatgtagggacccgggttcgaacagacgcccgtattagggaaaattggatgtccaaacaacatttctg 34698199  T
Q  127 atatataggctatatatcaaattgcaggttctacaatatataaaagtgtaaatagaatatgtggaactacccttgctggacttctagcctttggtgtaca 226  Q
    |||||||    |  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34698200 atatatata--agctatcaaattgcaggttctactatatataaaagtgtaaatagaatatgtggaactacccttgctggacttctagcctttggtgtaca 34698297  T
Q  227 atgggttgctagtaaagcaggaaagcaactggaaccggtaattgttggagtcctactctttctactaggtataatatttataaccaacaataacaatcta 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34698298 atgggttgctagtaaagcaggaaagcaactggaaccggtaattgttggagtcctactctttctactaggtataatatttataaccaacaataacaatcta 34698397  T
Q  327 tatacacactatggatcttggtaattgaccatttgatcattacattgtttcatctc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34698398 tatacacactatggatcttggtaattgaccatttgatcattacattgtttcatctc 34698453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 148 - 309
Target Start/End: Original strand, 34681590 - 34681751
Alignment:
Q  148 ttgcaggttctacaatatataaaagtgtaaatagaatatgtggaactacccttgctggacttctagcctttggtgtacaatgggttgctagtaaagcagg 247  Q
    |||||||| |||||||||| ||||||||||| ||||||| ||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||||    
T  34681590 ttgcaggtgctacaatatacaaaagtgtaaacagaatatttggaactacccttgccgggcttttagcctttggtgtacattgggttgctagtaaagcagg 34681689  T
Q  248 aaagcaactggaaccggtaattgttggagtcctactctttctactaggtataatatttataa 309  Q
    | | |||  |||||| ||||||||||||| |  ||||||| ||||||||||||| |||||||    
T  34681690 agatcaatgggaacctgtaattgttggagcctcactctttttactaggtataatttttataa 34681751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 18179325 - 18179387
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||||| ||||| ||||||||    
T  18179325 cccgtgagcataactcagttggcagggacatgcattgttatatgcagggaccggagttcgaac 18179387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 18003813 - 18003873
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcga 79  Q
    |||||||||||| |||||||| ||||||||| |||| |||||||||||  |||||||||||    
T  18003813 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcga 18003873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 25819181 - 25819244
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||||||| | |||||||||||| |||| |||||||||||||    
T  25819181 cccgtgagcatagctcagttggcagggacaatgcattattatatgtaggagccggggttcgaac 25819244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 52833205 - 52833142
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||| ||||||||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  52833205 cccgtgagcctaactcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 52833142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 7713002 - 7713048
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcag 65  Q
    ||||||| |||||||||||||||||||||| | ||||||||||||||    
T  7713002 cccgtgaacataactcagttgacagggacaaatattattatatgcag 7713048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 9768907 - 9768845
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||||| |||| |||||||||||   ||||||||||||    
T  9768907 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggtcggggttcgaac 9768845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 9931084 - 9931146
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||| || | || ||||||||    
T  9931084 cccgtgagcataactcagttagcagggacatgcattattatatgcaagagctggagttcgaac 9931146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 52961180 - 52961118
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| || |||||| |||| |||||||||||  |||||||||||||    
T  52961180 cccgtgagcatagctcagttggcaaggacatgcattgttatatgcaggggccggggttcgaac 52961118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 1580826 - 1580871
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgca 64  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||    
T  1580826 cccgtgagcataactcagttggcagggacatacaatgttatatgca 1580871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 40678819 - 40678880
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcga 79  Q
    |||||||||||| |||||||| ||||||| || ||||||||||||||||  |||||||||||    
T  40678819 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcga 40678880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 47141898 - 47141857
Alignment:
Q  25 agcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  47141898 agcataactcagttgacagggacatgcattgttatatgcagg 47141857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 2052781 - 2052718
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||| || |||||| |||||||||  |||||||||||||    
T  2052781 cccgtgagcatagctcagttggcagggacaatgcattatcatatgcaggggccggggttcgaac 2052718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 3341827 - 3341772
Alignment:
Q  26 gcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||| |||||||| ||||||||| ||||||||||||||||  |||||| ||||||    
T  3341827 gcatagctcagttggcagggacatgcattattatatgcaggggccggggatcgaac 3341772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 4605936 - 4605893
Alignment:
Q  23 tgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||    
T  4605936 tgagcataactcagttgacagagacatgcattgttatatgcagg 4605893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 17350057 - 17350120
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||| ||| |||||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  17350057 cccgtgagtatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 17350120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 29491466 - 29491529
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||| || ||||||||||||||||   ||||||||||||    
T  29491466 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggtcggggttcgaac 29491529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 39238712 - 39238775
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||| || ||||||||||||||||  ||| |||||||||    
T  39238712 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccgaggttcgaac 39238775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 47763484 - 47763421
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||| || ||||||||||||||||  |||| ||||||||    
T  47763484 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggagttcgaac 47763421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 9074006 - 9074040
Alignment:
Q  32 ctcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||||||||||| |||||||||||    
T  9074006 ctcagttgacagggacatacattgttatatgcagg 9074040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 9769674 - 9769616
Alignment:
Q  23 tgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||| |||||||| ||||||||| |||||||||||| ||| |  |||||||||||    
T  9769674 tgagcatagctcagttggcagggacatgcattattatatgtagggattggggttcgaac 9769616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 42908768 - 42908830
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||| || |||||||| ||||||||| |||| |||||||||||   ||||||||||||    
T  42908768 cccgtgagcttagctcagttggcagggacatgcattgttatatgcaggggtcggggttcgaac 42908830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 4288587 - 4288632
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||| |||  | |||||||||||||||||||||||    
T  4288587 cgtgagcataactcaattggtatggacatacattattatatgcagg 4288632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 8984574 - 8984513
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||| ||||||||||| |||||| ||    |||||||||||||| |||||||||||||    
T  8984574 ccgtgagcttaactcagttggcagggatattgcatattatatgcaggagccggggttcgaac 8984513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 9004345 - 9004390
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    |||||||||| |||||||| |||||||||| ||| |||||||||||    
T  9004345 cgtgagcatagctcagttggcagggacatatattgttatatgcagg 9004390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 24168676 - 24168615
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||| |||||||   ||| |||| |||||||||||| ||| ||||||||||||||    
T  24168676 ccgtgagcatagctcagtttgtaggaacatgcattattatatgtagggaccggggttcgaac 24168615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 25270257 - 25270197
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||| || ||||||| |||||| |||| ||||||| |||| ||||| |||||||    
T  25270257 cgtgagcataattcggttgacaaggacatgcattgttatatgtaggatccgggattcgaac 25270197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 43020611 - 43020655
Alignment:
Q  22 gtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||| ||| |||| ||||||||| ||||||||||||||||    
T  43020611 gtgagcatagctcggttggcagggacatgcattattatatgcagg 43020655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 50199564 - 50199512
Alignment:
Q  29 taactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||  |||||||| |||| |||||||||||  |||||||||||||    
T  50199564 taactcagttggtagggacatgcattgttatatgcaggggccggggttcgaac 50199512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 6951888 - 6951841
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6951888 cccgtgagcataactcagttgacagggacatgcattattatatgcagg 6951841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 24130556 - 24130603
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||    
T  24130556 cccgtgagcataactcagttggcagggacatacattgttatatgcagg 24130603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 26583098 - 26583160
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||||||   ||||||||||||    
T  26583098 cccgtgatcataactcaattgacagggacatgcattattatatgcaggggtcggggttcgaac 26583160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 9624979 - 9625042
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  9624979 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 9625042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 14868681 - 14868744
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  14868681 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 14868744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 27183780 - 27183717
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  27183780 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 27183717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 31108855 - 31108796
Alignment:
Q  22 gtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||  | |||||||||||    
T  31108855 gtgagcataactcagttggcagggacatgcataattatatgcaggggctggggttcgaac 31108796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 52030117 - 52030180
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||||||||||| ||||||| ||  |||||||||||||||  |||||||||||||    
T  52030117 cccgtgagcataactcagttggcagggacaatgtattattatatgcaggggccggggttcgaac 52030180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 3461821 - 3461779
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatg 62  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  3461821 ccgtgagcataactcagttgacagggacatgcattgttatatg 3461779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 16874288 - 16874226
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||||| |||| |||||||||||  ||| |||||||||    
T  16874288 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccgaggttcgaac 16874226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 16893543 - 16893501
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatat 61  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  16893543 cccgtgagcataactcagttgacagggacatacactgttatat 16893501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 44976570 - 44976614
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatg 62  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  44976570 cccgtgagcataactcagttgacagggacaatgcattattatatg 44976614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 7448462 - 7448399
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| ||||||||| |||||| || ||||||||||||||||  ||||| |||||||    
T  7448462 cccgtgagcatagctcagttgatagggacaatgcattattatatgcaggggccgggattcgaac 7448399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 7456604 - 7456541
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| ||||||||| |||||| || ||||||||||||||||  ||||| |||||||    
T  7456604 cccgtgagcatagctcagttgatagggacaatgcattattatatgcaggggccgggattcgaac 7456541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 12236596 - 12236643
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  12236596 cccgtgagcgtagctcagttggcagggacatgcattattatatgcagg 12236643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 21249088 - 21249026
Alignment:
Q  18 acccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||| |||||| |||||||||||| |||||  |||||||||||||||  |||||||||||||    
T  21249088 acccgtaagcatagctcagttgacagagacatg-attattatatgcaggggccggggttcgaac 21249026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 11668367 - 11668305
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||||||||||||| | | ||||  ||| |||||||||| | |||||||||||||    
T  11668367 cccgtgagcataactcagttgaaaagaacatgtattgttatatgcagaagccggggttcgaac 11668305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 19137616 - 19137678
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||| |||| |||| |||||||||||  ||| |||||||||    
T  19137616 cccgtgagcatagctcagttggcaggaacatgcattgttatatgcaggggccgaggttcgaac 19137678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 28951864 - 28951910
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    |||||||||||||||||||| |||  |||| ||||||||||||||||    
T  28951864 ccgtgagcataactcagttggcagatacatgcattattatatgcagg 28951910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 38507645 - 38507687
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatat 61  Q
    |||||||||||| |||||||| ||||||||| |||||||||||    
T  38507645 cccgtgagcatagctcagttggcagggacatgcattattatat 38507687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 40956785 - 40956743
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatat 61  Q
    |||||||||||||||||||||  ||||||| ||||||||||||    
T  40956785 cccgtgagcataactcagttggtagggacaaacattattatat 40956743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 19149423 - 19149464
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatg 62  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||    
T  19149423 cgtgagcataattcagttgacagagacatgcattattatatg 19149464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 41430879 - 41430834
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgca 64  Q
    |||||||||||||||||||||  ||||| || ||||||||||||||    
T  41430879 cccgtgagcataactcagttggtagggatatgcattattatatgca 41430834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 3955302 - 3955350
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcagg 66  Q
    |||||||||||| |||| ||||||||||| || ||||||||||||||||    
T  3955302 cccgtgagcatagctcaattgacagggacaatgcattattatatgcagg 3955350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 3993802 - 3993758
Alignment:
Q  22 gtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||| ||||||||| |||||||| |||| |||||||||||    
T  3993802 gtgagcatagctcagttgagagggacatgcattgttatatgcagg 3993758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 24160624 - 24160564
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||||||||| ||| ||||| || | |||||||||||   ||||||||||||    
T  24160624 cgtgagcataactcagttggcagagacatgcactgttatatgcaggggtcggggttcgaac 24160564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 47191369 - 47191417
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcagg 66  Q
    |||||||||||| |||||||| ||||||| || ||||||||||||||||    
T  47191369 cccgtgagcatagctcagttggcagggacaatgcattattatatgcagg 47191417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 41492596 - 41492534
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  41492596 cccgtgagcatagctcagttggcagggacatgcattattatatgcaggggccggggttcgaac 41492534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 27921893 - 27921955
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| ||||||||  |||||||| ||||||||||||||||  |||||||||||||    
T  27921893 cccgtgagcatagctcagttggtagggacatgcattattatatgcaggggccggggttcgaac 27921955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 49039543 - 49039481
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||||| |||| ||||||||||| || |||||||||||    
T  49039543 cccgtgagcatagctcagttggcagggacatgcattgttatatgcagggactggggttcgaac 49039481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 48991963 - 48991902
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||| |  |||||||||||||    
T  48991963 ccgtaagcataactcagttgacaggaacatacattgttatatgcaagggccggggttcgaac 48991902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 12796663 - 12796710
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||||||    
T  12796663 cccgtgagcataactcagttggcaggaacatacattgttatatgcagg 12796710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 20610739 - 20610798
Alignment:
Q  22 gtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||| |||||||| ||||||||| |||| |||||||||||  |||||||||||||    
T  20610739 gtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcgaac 20610798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 28520830 - 28520767
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  28520830 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 28520767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 17431378 - 17431420
Alignment:
Q  23 tgagcataactcagttgacagggacatacattattatatgcag 65  Q
    ||||||||||||||||||||||||||| |||| ||||||||||    
T  17431378 tgagcataactcagttgacagggacatgcattgttatatgcag 17431420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 54854277 - 54854215
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||||| ||| ||||||||||||  | |||||||||||    
T  54854277 cccgtgagcatagctcagttggcagggacatgcataattatatgcaggggctggggttcgaac 54854215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 4419782 - 4419726
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttc 77  Q
    ||||||||||||||||||| ||| ||||| |||| |||||||||||  |||||||||    
T  4419782 cgtgagcataactcagttgtcagagacatgcattgttatatgcaggggccggggttc 4419726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 56955 - 56896
Alignment:
Q  22 gtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||||||||| ||||||||| |||| ||||||||| |  |||| ||||||||    
T  56955 gtgagcataactcagttggcagggacatgcattgttatatgcaagggccggagttcgaac 56896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 9692958 - 9693021
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||||| | | ||||||||||||||||  |||||||||||||    
T  9692958 cccgtgagcatagctcagttggcagggataatgcattattatatgcaggggccggggttcgaac 9693021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 14149789 - 14149852
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||| |||| |||||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  14149789 cccgtgaccatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 14149852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 36008271 - 36008334
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||| || |||| |||||||||||  |||||||||||||    
T  36008271 cccgtgagcatagctcagttggcagggacaatgcattgttatatgcaggggccggggttcgaac 36008334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 43050031 - 43049984
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    |||||||||||| ||||||||||||| |||| |||| |||||||||||    
T  43050031 cccgtgagcatagctcagttgacaggaacatgcattgttatatgcagg 43049984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 48968309 - 48968246
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||  ||||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  48968309 cccgtgagcatagttcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 48968246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 53815692 - 53815755
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||| || ||||||||||||||||  | |||||||||||    
T  53815692 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggctggggttcgaac 53815755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 3465944 - 3465898
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcag 65  Q
    ||||||| ||||||||||||||||  ||||| |||||||||||||||    
T  3465944 cccgtgaacataactcagttgacaaagacatgcattattatatgcag 3465898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 8241471 - 8241425
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcag 65  Q
    ||||| ||||||||||||||| |||| |||| |||||||||||||||    
T  8241471 cccgttagcataactcagttgtcaggaacatgcattattatatgcag 8241425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 20166313 - 20166375
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||| || |||||||| ||||||||| |||| |||||||||||  ||| |||||||||    
T  20166313 cccgtgagcgtagctcagttggcagggacatgcattgttatatgcaggggccgaggttcgaac 20166375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 32887128 - 32887190
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||| |||| |||||||||||||||| |||||| |||||||| |||  || |||||||||    
T  32887128 cccgtgatcatagctcagttgacagggacgtacatttttatatgccggagtcgtggttcgaac 32887190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 33944461 - 33944399
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||||||||||||  |||   || ||||||||||||||||  |||||||||||||    
T  33944461 cccgtgagcataactcagttggtaggataatgcattattatatgcaggggccggggttcgaac 33944399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 36257691 - 36257753
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||||  || |||| ||||||||  |||||||||||||    
T  36257691 cccgtgagcatagctcagttggcagggacaagcagtattgtatgcaggggccggggttcgaac 36257753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 46482915 - 46482853
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||| |||||||  |||   |||||||||||||||||||| |||| ||||||||    
T  46482915 cccgtgagcataattcagttggtaggacaatacattattatatgcaggagccggtgttcgaac 46482853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 33359814 - 33359859
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgca 64  Q
    |||||||||||| ||||||||||| |||||| |||| |||||||||    
T  33359814 cccgtgagcatagctcagttgacatggacattcattgttatatgca 33359859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 42432014 - 42432067
Alignment:
Q  28 ataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| ||||||||| |||| ||||||||||| |  |||||||||||    
T  42432014 ataactcagttggcagggacatgcattgttatatgcagggattggggttcgaac 42432067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 49319392 - 49319437
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    |||||||||| |||||||| || |||||| ||||||||||||||||    
T  49319392 cgtgagcatagctcagttggcatggacatgcattattatatgcagg 49319437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 2565257 - 2565305
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcagg 66  Q
    |||||||||||| |||||||||||||||| || |||| |||||||||||    
T  2565257 cccgtgagcatagctcagttgacagggacaatgcattgttatatgcagg 2565305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 36045830 - 36045874
Alignment:
Q  22 gtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||| |||| ||||||||||||| |||| |||||||||||    
T  36045830 gtgagcatagctcaattgacagggacatgcattgttatatgcagg 36045874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 2696529 - 2696592
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||  |||||||||||||    
T  2696529 cccgtgagcataactcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 2696592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 7345425 - 7345472
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  7345425 cccgtgagcataactcagttggcagggacatgcattattatatgcagg 7345472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 25408794 - 25408751
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatg 62  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  25408794 cccgtgagcataactcagttgacatggacatacattattatatg 25408751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 2800015 - 2800078
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  2800015 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 2800078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 18577110 - 18577157
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||    
T  18577110 cccgtgagcataactcagttgacagggacatgtattgttatatgcagg 18577157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 21133618 - 21133555
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||||||||||| |||| ||| | |||||||||||||||||  ||||||||||||    
T  21133618 cccgtgagcataactcagttggcaggaacaatgcattattatatgcaggagtcggggttcgaac 21133555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 26657856 - 26657915
Alignment:
Q  22 gtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||| ||||||||  |||||||| |||| ||||||||||| ||||||||||||||    
T  26657856 gtgagcatagctcagttggtagggacatgcattgttatatgcagggaccggggttcgaac 26657915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 216245 - 216199
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcag 65  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||    
T  216245 cccgtgagcatagctcagttggcagggacatacattgttatatgcag 216199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 692805 - 692759
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcag 65  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||    
T  692805 cccgtgagcatagctcagttggcagggacatacattgttatatgcag 692759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 697014 - 696968
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcag 65  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||    
T  697014 cccgtgagcatagctcagttggcagggacatacattgttatatgcag 696968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 729868 - 729822
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcag 65  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||    
T  729868 cccgtgagcatagctcagttggcagggacatacattgttatatgcag 729822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 853763 - 853717
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcag 65  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||    
T  853763 cccgtgagcatagctcagttggcagggacatacattgttatatgcag 853717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 7314730 - 7314792
Alignment:
Q  20 ccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||  ||| |||||||||    
T  7314730 ccgtgagcataactcaattggcagggacaatacattattatatgcaggggccgaggttcgaac 7314792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 25470944 - 25470902
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatat 61  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  25470944 cccgtgagcataactcagttgacaggaacatgcattattatat 25470902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 17467278 - 17467322
Alignment:
Q  22 gtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||    
T  17467278 gtgagcataactcagttggtagggatatacattattatatgcagg 17467322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 38790672 - 38790624
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcagg 66  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  38790672 cccgtgagcataactcagttggcagggacaatgcattattatatgcagg 38790624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 6325268 - 6325314
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  6325268 cccgtgagcata-ctcagttgatagggacatacataattatatgcagg 6325314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 16808455 - 16808412
Alignment:
Q  23 tgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||    
T  16808455 tgagcataactcagttagcagggacatgcattattatatgcagg 16808412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 8034527 - 8034589
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||||||| ||| | |||   || ||||||||||||||||| |||||||||||||    
T  8034527 cccgtgagcataactccgttaataggacaatgcattattatatgcaggagccggggttcgaac 8034589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 41793070 - 41793009
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||| ||| |||| |||| |||| |||||||||||| |||||||||||||    
T  41793070 cccgtgagcatagctcaattggcagg-acatgcattgttatatgcaggagccggggttcgaac 41793009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 1588766 - 1588826
Alignment:
Q  22 gtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||| || ||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  1588766 gtgagcatagcttagttggcagggacaatgcattattatatgcaggggccggggttcgaac 1588826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 10292348 - 10292396
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcagg 66  Q
    |||||||||||| |||||||| ||||||| || ||||||||||||||||    
T  10292348 cccgtgagcatagctcagttggcagggacaatgcattattatatgcagg 10292396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 6447579 - 6447516
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||  |||||||||||||    
T  6447579 cccgtgagcataactcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 6447516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 22867088 - 22867042
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatgcagga 67  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||    
T  22867088 cgtgagcataactcagttgacaaggacatgcattattatatgcagga 22867042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 34325262 - 34325323
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaa 80  Q
    ||||||| |||  |||||||||||||||||| |||||||||||||||| || ||||||||||    
T  34325262 cccgtgaacatggctcagttgacagggacatgcattattatatgcagggactggggttcgaa 34325323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 5932116 - 5932069
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||| |||||||||||||| || ||||||||||||||||    
T  5932116 cccgtgagcataattcagttgacagggatatgcattattatatgcagg 5932069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 35813340 - 35813293
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||||    
T  35813340 cccgtgagcatagctcagttgacagggacatgcattgttatatgcagg 35813293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 38361482 - 38361529
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    |||||||||||| ||||||||||||||||||||||| | |||||||||    
T  38361482 cccgtgagcatagctcagttgacagggacatacattgtgatatgcagg 38361529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 3536034 - 3535972
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||  ||||||| ||||||||| |||| |||||| ||||| |||||||||||||    
T  3536034 cccgtgagcatagttcagttggcagggacatgcattgttatatacaggagccggggttcgaac 3535972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 28537132 - 28537194
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||||||| |||||| |||||| |||| ||||||||| |  |||||||||||||    
T  28537132 cccgtgagcataactcaattgacatggacatgcattgttatatgcatgggccggggttcgaac 28537194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 4674912 - 4674851
Alignment:
Q  21 cgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||| |||||||||||||||| || ||||||||||||||||   ||||||||||||    
T  4674912 cgtgagcatagctcagttgacagggacaatgcattattatatgcaggggtcggggttcgaac 4674851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 1463870 - 1463930
Alignment:
Q  22 gtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||| |||||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  1463870 gtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 1463930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 33756349 - 33756310
Alignment:
Q  27 cataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  33756349 cataactcagttggcaggaacatacattattatatgcagg 33756310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 37417228 - 37417165
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||| || |||||||| |||||||| ||||||||||||||||||  || ||||||||||    
T  37417228 cccgtgagcttagctcagttggcagggacaatacattattatatgcaggggccagggttcgaac 37417165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 1345428 - 1345386
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatat 61  Q
    ||||||| |||| |||||||||||| |||||||||||||||||    
T  1345428 cccgtgaacatagctcagttgacagagacatacattattatat 1345386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 7147117 - 7147055
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| ||||||||  | |||||| ||||||||||||||||   ||||||||||||    
T  7147117 cccgtgagcatagctcagttggtaaggacatgcattattatatgcaggggtcggggttcgaac 7147055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 11246591 - 11246545
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||| |||||||| ||||||||| |||| |||||||||||    
T  11246591 ccgtgagcatagctcagttggcagggacatgcattgttatatgcagg 11246545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 20186864 - 20186910
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||  |||||||| ||||||||| ||||||||||||||||    
T  20186864 ccgtgagcattgctcagttggcagggacatgcattattatatgcagg 20186910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 25660909 - 25660971
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||||| || |||| |||||||||||  ||||| |||||||    
T  25660909 cccgtgagcatagctcagttggcagggatatgcattgttatatgcaggggccgggattcgaac 25660971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 33800890 - 33800952
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||||||||||||  |||   || ||||||||||||||||  |||||||||||||    
T  33800890 cccgtgagcataactcagttggtaggacaatgcattattatatgcaggggccggggttcgaac 33800952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 36742065 - 36742003
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||| |||||  ||| ||||||||||| | ||||||||||||    
T  36742065 cccgtgagcatagctcagttggcagagacatgaattgttatatgcagggatcggggttcgaac 36742003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 40250275 - 40250213
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||  |||| |||| ||||||||||||  ||||||||||||    
T  40250275 cccgtgagcatagctcagttggcagtaacatgcattgttatatgcaggagtcggggttcgaac 40250213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 30119955 - 30119996
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattata 60  Q
    |||||||||||| ||||||||||| |||||| ||||||||||    
T  30119955 cccgtgagcatagctcagttgacaaggacatgcattattata 30119996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 9176884 - 9176828
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggt 75  Q
    |||||||||||||||||||||  |||   || |||||||||||||||| ||||||||    
T  9176884 cccgtgagcataactcagttggaaggacaatgcattattatatgcagggaccggggt 9176828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 21970538 - 21970475
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||||||||||| || |||||||||||||||| | ||||||||||||    
T  21970538 cccgtgagcatagctcagttgacagggacaatgcattattatatgcagggatcggggttcgaac 21970475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 34034347 - 34034409
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  34034347 cccgtgagcatagctcagttggcagggacaatacattattatatgcagg-accggggttcgaac 34034409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 39334979 - 39334917
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||||  | |||||||||||    
T  39334979 cccgtgagcataactcagttggcagggacatgcattattatatacaggggctggggttcgaac 39334917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 20684271 - 20684315
Alignment:
Q  22 gtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  20684271 gtgagcttagctcagttgacagggacatacattattatatgcagg 20684315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 40471159 - 40471197
Alignment:
Q  28 ataactcagttgacagggacatacattattatatgcagg 66  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  40471159 ataactcagttgacagggacatgcattattatatgcagg 40471197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 29034972 - 29035035
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||| ||| |||||||| | ||||||||||||||||  |||||||||||||    
T  29034972 cccgtgagcatagctcacttggcagggacaatgcattattatatgcaggggccggggttcgaac 29035035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 38581701 - 38581658
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatgca 64  Q
    |||||||||||||||||||  || ||||||||||||||||||||    
T  38581701 cgtgagcataactcagttggtagagacatacattattatatgca 38581658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 38807878 - 38807925
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    |||||||| |||||||||||| ||||||||| ||| ||||||||||||    
T  38807878 cccgtgagtataactcagttggcagggacatgcataattatatgcagg 38807925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 2057479 - 2057525
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||| |||||||| |||||| ||||||| |||||||||||    
T  2057479 ccgtgagcatagctcagttggcagggatatacattgttatatgcagg 2057525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 32288373 - 32288435
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||| || ||||||||||||  |||| |||||||||||| ||| | ||||||||||||    
T  32288373 cccgtgagcgtagctcagttgacagaaacatgcattattatatgtagggatcggggttcgaac 32288435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 41288136 - 41288075
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaacg 82  Q
    ||||||| |||||||||||| ||| |||| ||||| ||||||||| || ||||||||||||||    
T  41288136 ccgtgagtataactcagttggcagagacaaacattgttatatgca-gagccggggttcgaacg 41288075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 44487865 - 44487803
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||| ||| ||||||||| |||||||| |||||||||||||| |  |||| ||||||||    
T  44487865 cccgtgagtatagctcagttgatagggacatgcattattatatgcaagggccggagttcgaac 44487803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 37884844 - 37884893
Alignment:
Q  32 ctcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||| |||||| || ||||||||||||| || ||||||||||||||    
T  37884844 ctcagttggcagggatatgcattattatatgcggggaccggggttcgaac 37884893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 39118392 - 39118437
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||| |||||||||||  ||||||||||||| |||||||||||    
T  39118392 cgtgagcgtaactcagttggtagggacatacattgttatatgcagg 39118437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 17223493 - 17223454
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatat 61  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  17223493 cgtgagcataactcagttgacagggata-acattattatat 17223454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 19352865 - 19352909
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatgcag 65  Q
    ||||| ||||||||||||||||| ||||| |||| ||||||||||    
T  19352865 cgtgaacataactcagttgacagagacatgcattgttatatgcag 19352909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1808 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 931 - 885
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcag 65  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||    
T  931 cccgtgagcataactcagttgtcagggacatacattgttatatgcag 885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 7465463 - 7465525
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||| ||||| ||||||||||||||||  |||||||||||||    
T  7465463 cccgtgagcatagctcagttggcagagacatgcattattatatgcaggggccggggttcgaac 7465525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 35195840 - 35195902
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||| |||||| |||||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  35195840 cccgtaagcatagctcagttggcagggacatgcattattatatgcaggggccggggttcgaac 35195902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 35498395 - 35498442
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  35498395 cccgtaagcataactcagttggcagggacatgcattattatatgcagg 35498442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 38032953 - 38032891
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||| ||||||||||||| ||||||||| |||| |||||| ||||  |||||||||||||    
T  38032953 cccgtgaacataactcagttggcagggacatgcattgttatatacaggggccggggttcgaac 38032891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 45268024 - 45267962
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||| |||||| ||||||||||||||||  ||| ||||||||    
T  45268024 cccgtgagcatagctcagttggcagagacatatattattatatgcaggagtcggagttcgaac 45267962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 8766909 - 8766862
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||||||||| ||||||||| |||| | |||||||||    
T  8766909 cccgtgagcataactcagttggcagggacattcattgtcatatgcagg 8766862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 21285452 - 21285389
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||| || |||| |||||||||||  |||||||||||||    
T  21285452 cccgtgagcatagctcagttggcagggacaatgcattgttatatgcaggggccggggttcgaac 21285389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 31475939 - 31475876
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||||||  | |||||||||||    
T  31475939 cccgtgagcatagctcagttggcagggacattgcattattatatgcaggggctggggttcgaac 31475876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 32534679 - 32534636
Alignment:
Q  23 tgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||||| |||||||||||||  |||||||||||    
T  32534679 tgagcataactcagttggcagggacatacatggttatatgcagg 32534636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 34693862 - 34693819
Alignment:
Q  23 tgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||||    
T  34693862 tgagcataactcacttgacagggacatgcataattatatgcagg 34693819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 38451862 - 38451921
Alignment:
Q  22 gtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaa 80  Q
    ||||||||| |||||||||||||||| || |||| |||||||||||  ||||||||||||    
T  38451862 gtgagcatagctcagttgacagggacaatgcattgttatatgcaggggccggggttcgaa 38451921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 44409201 - 44409260
Alignment:
Q  22 gtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||||||||  ||||||||| |||||||||||||| |   ||||||||||||    
T  44409201 gtgagcataactcagttagcagggacatgcattattatatgcaagggtcggggttcgaac 44409260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 3246583 - 3246541
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatg 62  Q
    ||||||||||| |||||||||||||||||| |||| |||||||    
T  3246583 ccgtgagcatagctcagttgacagggacatgcattgttatatg 3246541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 3481266 - 3481204
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||||||||| ||  | |||| | |||| |||||||||||| |||||||||||||    
T  3481266 cccgtgagcataactcaggtggtatggacgtgcattgttatatgcaggagccggggttcgaac 3481204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 27726467 - 27726405
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||| |||| |||||||| ||||||||| |||||||||| ||||   |||||||||||||    
T  27726467 cccgtgaacatagctcagttggcagggacatgcattattataagcagtggccggggttcgaac 27726405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 32814825 - 32814871
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||| ||||||||  |||||||| ||||||||||||||||    
T  32814825 ccgtgagcatagctcagttggtagggacatgcattattatatgcagg 32814871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 41139083 - 41139145
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaa 80  Q
    |||||||||||| |||||||| ||||||| || ||||||||||||||||   |||||||||||    
T  41139083 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggtcggggttcgaa 41139145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 48088629 - 48088670
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatg 62  Q
    |||||||||| |||||||| |||| |||||||||||||||||    
T  48088629 cgtgagcatagctcagttggcaggaacatacattattatatg 48088670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 14818464 - 14818416
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcagg 66  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||||||    
T  14818464 cccgtgagcatagctcagttggcagggacagtgcattattatatgcagg 14818416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 15265462 - 15265414
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcagg 66  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||||||    
T  15265462 cccgtgagcatagctcagttggcagggacagtgcattattatatgcagg 15265414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 17305487 - 17305443
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgca 64  Q
    ||||||||||| |||||||| ||||||||| |||| |||||||||    
T  17305487 ccgtgagcatagctcagttggcagggacatgcattgttatatgca 17305443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 47355808 - 47355868
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||| ||||| |||| ||||||||| || |||| |||||||||||  |||||||||||||    
T  47355808 cgtgaacataattcagatgacagggatatgcattgttatatgcaggggccggggttcgaac 47355868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 14948878 - 14948836
Alignment:
Q  23 tgagcataactcagttgacagggacatacattattatatgcag 65  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  14948878 tgagcatagctcagttgacagggacatacattattatatgcag 14948836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 31411159 - 31411098
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaa 80  Q
    |||||||||||||||||||||||||| |||| |||||||||||| |||| | | ||||||||    
T  31411159 cccgtgagcataactcagttgacaggaacatgcattattatatgtaggagctgaggttcgaa 31411098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 34524872 - 34524932
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcga 79  Q
    |||||||||||| |||||||| ||||||||| |||| |||||||||||  |||||||||||    
T  34524872 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcga 34524932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 9064862 - 9064925
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  9064862 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 9064925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 14981801 - 14981738
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||||||  |||||||||||||    
T  14981801 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaac 14981738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 8175993 - 8176055
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||||||| ||||| |||| ||||||||||| || || ||||||||    
T  8175993 cccgtgagcatagctcagttgacagagacatgcattgttatatgcagggactggtgttcgaac 8176055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 9422830 - 9422892
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||||||||||| ||||||||| |||| |||||| || || | |||||||||||    
T  9422830 cccgtgagcataactcagttggcagggacatgcattgttatatacaagagctggggttcgaac 9422892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 31639138 - 31639200
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||||||||||||||||||||  |||| ||||||| |||  |||| ||||||||    
T  31639138 cccgtgagcataactcagttgacagggacacgcattgttatatgtaggggccggagttcgaac 31639200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 12341418 - 12341461
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatg 62  Q
    ||||||||||||  |||||||||||| |||||||||||||||||    
T  12341418 cccgtgagcatagttcagttgacaggaacatacattattatatg 12341461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 17305513 - 17305560
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||| |||||||||||||  |||||||| ||||||||||||||||    
T  17305513 cccgtgaacataactcagttggtagggacatgcattattatatgcagg 17305560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 22730800 - 22730753
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||||||||| ||| ||||| |||| |||||||||||    
T  22730800 cccgtgagcataactcagttggcagagacatgcattgttatatgcagg 22730753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 10455739 - 10455801
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||  ||||||| |||| |||| |||| |||||||||||  |||||||||||||    
T  10455739 cccgtgagcatagttcagttggcaggaacatgcattgttatatgcaggggccggggttcgaac 10455801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 14949114 - 14949072
Alignment:
Q  23 tgagcataactcagttgacagggacatacattattatatgcag 65  Q
    ||||||||||||||||| |||  ||||||||||||||||||||    
T  14949114 tgagcataactcagttggcagaaacatacattattatatgcag 14949072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 24256913 - 24256975
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||||||||| |||||||  || ||||| ||||||||||||||||  ||| |||||||||    
T  24256913 cccgtgagcataagtcagttggtagagacatgcattattatatgcaggggccgaggttcgaac 24256975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 30668281 - 30668235
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    |||||||||||||||||||| ||  ||||| ||||||||||||||||    
T  30668281 ccgtgagcataactcagttggcatagacatgcattattatatgcagg 30668235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 3029965 - 3030006
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatg 62  Q
    ||||||||||||| ||||| |||||||||| |||||||||||    
T  3029965 cgtgagcataacttagttggcagggacataaattattatatg 3030006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 19135926 - 19135971
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgca 64  Q
    |||||||||||| ||| |||| ||||||||| ||||||||||||||    
T  19135926 cccgtgagcatagctcggttggcagggacatgcattattatatgca 19135971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 20858475 - 20858434
Alignment:
Q  25 agcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||||||| ||||||||| |||| |||||||||||    
T  20858475 agcataactcagttggcagggacatgcattgttatatgcagg 20858434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 17176154 - 17176198
Alignment:
Q  27 cataactcagttgacagggacatacattattatatgcaggaaccg 71  Q
    |||| |||||||||||||||||| |||| ||||||||||| ||||    
T  17176154 catagctcagttgacagggacatgcattgttatatgcagggaccg 17176198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 34131 - 34070
Alignment:
Q  19 cccgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaa 80  Q
    |||||||||||| |||||||| ||||||||| |||| |||||||||||  ||||||||||||    
T  34131 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcgaa 34070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 7072 - 7135
Alignment:
Q  19 cccgtgagcataactcagttgacagggaca-tacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| ||||||||  ||||||| | ||||||||||||||||  |||||||||||||    
T  7072 cccgtgagcatagctcagttgttagggacaatgcattattatatgcaggggccggggttcgaac 7135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 25022 - 25085
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||||| |||||||| ||||||| || ||||||||||||||||  | |||||||||||    
T  25022 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggctggggttcgaac 25085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 4518 - 4564
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||| |||||||| ||||||||| |||| |||||||||||    
T  4518 ccgtgagcatagctcagttggcagggacatgcattgttatatgcagg 4564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 4538 - 4584
Alignment:
Q  20 ccgtgagcataactcagttgacagggacatacattattatatgcagg 66  Q
    ||||||||||| |||||||| ||||||||| |||| |||||||||||    
T  4538 ccgtgagcatagctcagttggcagggacatgcattgttatatgcagg 4584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 4904 - 4856
Alignment:
Q  19 cccgtgagcataactcagttgacagggac-atacattattatatgcagg 66  Q
    |||||||||||| |||||||| ||||||| || ||||||||||||||||    
T  4904 cccgtgagcatagctcagttggcagggacaatgcattattatatgcagg 4856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 20734 - 20782
Alignment:
Q  33 tcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    ||||||| |||||||||||||| ||||||||| | ||||||||| ||||    
T  20734 tcagttggcagggacatacattgttatatgcatggaccggggtttgaac 20782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 4322 - 4382
Alignment:
Q  21 cgtgagcataactcagttgacagggacatacattattatatgcaggaaccggggttcgaac 81  Q
    |||||||||| ||||||||| |||   |||||||||||||||||||   ||||||||||||    
T  4322 cgtgagcatagctcagttgataggacaatacattattatatgcaggggtcggggttcgaac 4382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University