View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_21 (Length: 381)
Name: NF12871_low_21
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 30289470 - 30289814
Alignment:
| Q |
18 |
aacaacatgggaaagggtcatacccgcatatggaggagaaccagaatctttccttaataatgttgtcacacctatatacgatgttataaaaaaggtactg |
117 |
Q |
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| T |
30289470 |
aacaacatgggaaagggtcatacccgcatatggaggagaaccagaatctttccttaataatgttgtcacacctatatacgatgttataaaaaaggtactg |
30289569 |
T |
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| Q |
118 |
tctaatgcatcctatttttgtttctttgtctgttttcttcaatttaactaatatatctccaaacaataggaagttgaaaatagcaaaggtgggacaacgg |
217 |
Q |
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| T |
30289570 |
tctaatgcatcctatttttgtttctttgtctgttttcttcaatttaactaatatatctccaaacaataggaagttgaaaatagcaaaggtgggacaacgg |
30289669 |
T |
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| Q |
218 |
accattctgcatggagaaactatgatgatctgaatgaatacttctggtcagtagtataacctttaaaccaatattttctagttgttttcatgtggcctat |
317 |
Q |
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| T |
30289670 |
accattctgcatggagaaactatgatgatctgaatgaatacttctggtcagtagtataacctttagaccaatattttctagttgttttcatgtggcctat |
30289769 |
T |
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| Q |
318 |
gaagcactgacacatacacaggacacgacactgacatgtacacac |
362 |
Q |
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| T |
30289770 |
gaagcactgacacatacacaggacacgacactgacatgtagacac |
30289814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 21768564 - 21768601
Alignment:
| Q |
316 |
atgaagcactgacacatacacaggacacgacactgaca |
353 |
Q |
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| T |
21768564 |
atgaagcactgacacatacaccggacacgacattgaca |
21768601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 55258374 - 55258414
Alignment:
| Q |
313 |
cctatgaagcactgacacatacacaggacacgacactgaca |
353 |
Q |
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| T |
55258374 |
cctatgaagcactgacacagacactagacacgacactgaca |
55258414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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