View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_22 (Length: 372)
Name: NF12871_low_22
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 42797202 - 42797544
Alignment:
| Q |
9 |
agagaagaaaagatcattgggcatgtttaattaccttcacatcatttggcgagatggacatggctttccaagagcgacttttgtacaaatcggccagaaa |
108 |
Q |
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| T |
42797202 |
agagaagaaaagatcattgggcatgtttaattaccttcacatcatttggcgagatggacatggctttccaagagcgacttttgtacaaatcggtcagaaa |
42797301 |
T |
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| Q |
109 |
ccagtttgtacggtccattcatgactgtcgaatggaccgtacaaactgattgcgggatcaaaacaaaaccaggtctacctactcctagctcctccttcat |
208 |
Q |
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| T |
42797302 |
ccagtttgtacggtccattcatgactgtcgaatggaccgtacaaactgattgcgggatcaaaacaaaaccaggtctacctactcctag---ctccttcat |
42797398 |
T |
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| Q |
209 |
gagagcccaaaaactgactggttacttgtcgttgtgatcatatactgcttctatcttcattcttcaatggttttccggctgcctggcatcaaaacaacaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42797399 |
gagagcccaaaaactgactggttacttgtcgttgtgatcatatactgcttctatcttcattcttcaatggttttccggctgcctggcatcaaaacaacaa |
42797498 |
T |
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| Q |
309 |
aggacactaatcttataaaggctaaatatcgggatttggaaacaac |
354 |
Q |
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| T |
42797499 |
aggacactaatcttctaaaggctaaatatcgggatttggaaacaac |
42797544 |
T |
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