View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_24 (Length: 338)
Name: NF12871_low_24
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 71 - 329
Target Start/End: Original strand, 37865170 - 37865428
Alignment:
| Q |
71 |
tgacctgataggagatggttcaacgaatccttgatatgatttaatacaattttagaaattgggttcgacctaactcaaatattggccttcacgtccagga |
170 |
Q |
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| T |
37865170 |
tgacctgataggagatggttcaacgaatccttgatatgatttaatacaattttagaaattgggttcgacctaactcaaatattggccttcacgtccagga |
37865269 |
T |
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| Q |
171 |
ctatctgagtggttcgatagtgatgacctaatggcaagtggtccaatagatcttgtatatactctgatactattttacaagttgggttgggtctaactca |
270 |
Q |
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| T |
37865270 |
ctatctgagtggttcgatagtgatgacctaatggaaggtggtccaacatatcttgtatatactctgatactattttacaagttgggttgggtctaactca |
37865369 |
T |
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| Q |
271 |
aatattgggcttgattcgtgaggacaaattgtgaggaccgcatgtttttccaccctatg |
329 |
Q |
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| T |
37865370 |
aatattgggcttgattcgtgaggataaattgtgaggaccgcatgtttttccaccctatg |
37865428 |
T |
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