View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_25 (Length: 332)
Name: NF12871_low_25
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_25 |
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| [»] scaffold0552 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 46613471 - 46613780
Alignment:
| Q |
18 |
cttgagcaccattattaatattattatcaggattaatcatataaaaagcttcagaatccttagaaccaattactctttcaaatctacctctcatataagt |
117 |
Q |
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| T |
46613471 |
cttgagcaccattattaatattattatcaggattaatcatataaaaagcttcagaatccttagaaccaattactctttcaaatctacctctcatataagt |
46613570 |
T |
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| Q |
118 |
catttggtcaccatcagaactttccttatgatcagatgcggttggtaacaccccagctcccatggacacacctctcaaatgttgcataacttgaagttct |
217 |
Q |
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| T |
46613571 |
catttggtcaccatcagaactttccttatgatcagatgcggttggtaacacccctgctcccatggacacacctctcaaatgttgcataacttgaagttct |
46613670 |
T |
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| Q |
218 |
tcatcacccatttgtttcctcctaattgaatacccaacttttcttccattacaataaacagcccaaacaaactcttccaacaacttcttcttattcgttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46613671 |
tcatcacccatttgtttcctcctaattgaatacccaacttttcttccattacaataaacagcccaaacaaactcttccaacaacttcttcttattcgttt |
46613770 |
T |
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| Q |
318 |
tcatctcact |
327 |
Q |
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| T |
46613771 |
tcgtctcact |
46613780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 1777 - 1726
Alignment:
| Q |
30 |
tattaatattattatcaggattaatcatataaaaagcttcagaatccttaga |
81 |
Q |
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| T |
1777 |
tattaatactgttatcaggattaatcttataaaaagcttcagaatccttaga |
1726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 6764227 - 6764278
Alignment:
| Q |
30 |
tattaatattattatcaggattaatcatataaaaagcttcagaatccttaga |
81 |
Q |
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| T |
6764227 |
tattaatactgttatcaggattaatcttataaaaagcttcagaatccttaga |
6764278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 6742471 - 6742504
Alignment:
| Q |
71 |
gaatccttagaaccaattactctttcaaatctac |
104 |
Q |
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| T |
6742471 |
gaatccttagaaccaactactctttcaaatctac |
6742504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 46089878 - 46089806
Alignment:
| Q |
42 |
tatcaggattaatcatataaaaagcttcagaatccttagaaccaattactctttcaaatctacctctcatata |
114 |
Q |
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|||||||||| |||||||| |||||||||||||| |||| |||| | ||| ||||| ||| |||||||||| |
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| T |
46089878 |
tatcaggattcatcatatagaaagcttcagaatctctagagccaacaattctctcaaacctagctctcatata |
46089806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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