View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_28 (Length: 293)
Name: NF12871_low_28
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 14373148 - 14373412
Alignment:
| Q |
17 |
atgacattggttgttgtttgagttttgagcattaatatttgttttgttgaattgacaccgattggtcatgtttagttgtgctgacgagtaatactacgag |
116 |
Q |
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| T |
14373148 |
atgacattggttgttgtttgagttttgagcattaatatttgttttgttgaattgacactgattggtcatgtttagttgtgctgacgagtaatactacaag |
14373247 |
T |
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| Q |
117 |
gttttaccaacgaggattgacatggttgtagttaaagtttcgaacaattttcaagccttggttcgttgtagactgtatatgccactgctttctttaaata |
216 |
Q |
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| T |
14373248 |
gttttaccaacgaggattgacatggttgtagttagagtttcgaacaattttcaagcattggttcgttgtagactgtatatgccactgctttctttaaata |
14373347 |
T |
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| Q |
217 |
tgttaatagttatctttgtagtattgacacctctgatcaaaagtgtgtcccgatgttcaacatgt |
281 |
Q |
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| T |
14373348 |
tgttaatagttatctttgtagtattgacacctctgatcaaaagcgtgtcccgattttcgacatgt |
14373412 |
T |
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