View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12871_low_3 (Length: 673)
Name: NF12871_low_3
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_3 |
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| [»] scaffold0215 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 525; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 19 - 582
Target Start/End: Complemental strand, 18851082 - 18850516
Alignment:
| Q |
19 |
aacatgcctaatccaatgagtgtccgtgcttcataaaatagtgttcatatgcttagaaaatgaaagttacttccctttcttaaaagttgttcgtcaatac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18851082 |
aacatgcctaatccaatgagtgtccgtgcttcatagaatagtgttcatatgcttagaaaatgaaagttacttccctttcttaaaagttgttcgtcaatac |
18850983 |
T |
|
| Q |
119 |
tttccatcatttaaagttgagaggaagctagaaactttctatgataatctagtgtagaattttgcaactgttcagattggaggttttatatgctagaact |
218 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18850982 |
tttccaccatttgaagttgagaggaagctagaaactttctatgataatctagtgtagaattttgcaactgttcagattggaggttttatatgctagaact |
18850883 |
T |
|
| Q |
219 |
ttgtatgataaaatttatatatgtgaacatttcctattacacttccacatatagttagctaaaactacataaagtgtgtagaaactagcacattcatgtg |
318 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18850882 |
ttgtatgataaactttatatatgtgaacatttcctattacacttccacatatagttagctaaagctacataaagtgtgtagaaactagcacattcatgtg |
18850783 |
T |
|
| Q |
319 |
tgtatacgtataaaattttcaagacaagtatccgtggttgaacaaattctataattgatctataaagtgattaattgatttaacaactggcaccattctt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18850782 |
tgtatacgtataaaattttcaagacaagtatccgtggttgaacaaattctataattgatctataaagtgattaattgatttaacaactggcaccattctt |
18850683 |
T |
|
| Q |
419 |
tggtttttagattgttaattaaccacctaattactgtagtggt---ttagtttataaacttgaagagctgctgctaaagtgagaagattgagactactag |
515 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18850682 |
tggtttttacattattaattaaccacctaattactgtagtggttcattagtttataaacttgaagagctgctgctaaagtgagaagattgagactactag |
18850583 |
T |
|
| Q |
516 |
ctgattcaatggcgttgatgggatgaaattagattttgcggacagtcaagagtagtttgatctcttt |
582 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18850582 |
ctgattcaatggcgttgatgggatgaaattagattttgcggacagtcaagagtagtttgatctcttt |
18850516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Original strand, 16353520 - 16353979
Alignment:
| Q |
19 |
aacatgcctaatccaatgagtgtccgtgcttcataaaatagtgttcatatgcttagaaaatgaaagttacttccctttcttaaaagttgttcgtcaatac |
118 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16353520 |
aacatgcctaatccaaggagtgttcgtgcttcacataatagtgttcataggcttagaaaatgaaagttacttccctttcttaaaagttgttcgtcaatac |
16353619 |
T |
|
| Q |
119 |
tttccatcatttaaagttgagaggaagctagaaactttctatgataatctagtgtagaattttgcaactgttcagattggaggttttatatgctagaact |
218 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
16353620 |
tttccatcatttgaagttgagaggaggctagaaactttctatgataatctagtgtagaattttgcaactgtttctattggaggttttatatgctagaact |
16353719 |
T |
|
| Q |
219 |
ttgtatgataaaatttatatatgtgaacatttcctattacacttccacatatagttagctaaaactacat-aaagtgtgtagaaactagcacattcatgt |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16353720 |
ttgtatgataaactttatatatgtgaacatttcctattacacttccacatatagtttgctaaaactacataaaagtgtgtagaaactagcacattcatgt |
16353819 |
T |
|
| Q |
318 |
gtgtatacgtataaaattttcaagacaagtatccgtggttgaacaaattctataattgatctataaagtgattaattgatttaacaactggcaccattct |
417 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16353820 |
gtgtaaacgtataaaattttcaagacaagtatctgtggttgaacaaattctataattgatctataaagtgattaattgatttaacaactggcaccattct |
16353919 |
T |
|
| Q |
418 |
ttggtttttagattgttaattaaccacctaattactgtagtggt---ttagtttataaacttga |
478 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
16353920 |
ttggtttttacatt----attaaccacctgattactgtagtggttcattagtttataaacttga |
16353979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 481 - 583
Target Start/End: Original strand, 16357822 - 16357924
Alignment:
| Q |
481 |
agctgctgctaaagtgagaagattgagactactagctgattcaatggcgttgatgggatgaaattagattttgcggacagtcaagagtagtttgatctct |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16357822 |
agctgctgctaaagtgagaagattgagactactagctgattcaatggcgttgatgggatgaaagtagattttgcggacagtcaagagtagtttgatctct |
16357921 |
T |
|
| Q |
581 |
ttg |
583 |
Q |
| |
|
||| |
|
|
| T |
16357922 |
ttg |
16357924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 31060945 - 31060916
Alignment:
| Q |
24 |
gcctaatccaatgagtgtccgtgcttcata |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31060945 |
gcctaatccaatgagtgtccgtgcttcata |
31060916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0215 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 19 - 583
Target Start/End: Original strand, 23364 - 23931
Alignment:
| Q |
19 |
aacatgcctaatccaatgagtgtccgtgcttcataaaatagtgttcatatgcttagaaaatgaaagttacttccctttcttaaaagttgttcgtcaatac |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23364 |
aacatgcctaattcaatgagtgtccgtgcttcatagaatagtgttcatatgcttagaaaatgaaagttacttccctttcttaaaagttgttcgtcaatac |
23463 |
T |
|
| Q |
119 |
tttccatcatttaaagttgagaggaagctagaaactttctatgataatctagtgtagaattttgcaactgttcagattggaggttttatatgctagaact |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23464 |
tttccatcatttgaagttgagaggaagctagaaactttctatgataatctagtataggattttgcaactgttcagattggaggttttatatgctagaact |
23563 |
T |
|
| Q |
219 |
ttgtatgataaaatttatatatgtgaacatttcctattacacttccacatatagttagctaaaactacataaagtgtgtagaaactagcacattcatgtg |
318 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23564 |
ttgtatgataaactttatatatgtgaacatttcctattacacttccgcatatagttagctaaaactacataaagtgtgtagaaactagcacattcatgtg |
23663 |
T |
|
| Q |
319 |
tgtatacgtataaaattttcaagacaagtatccgtggttgaacaaattctataattgatctataaagtgattaattgatttaacaactggcaccattctt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23664 |
tgtatacgtataaaattttcaagacaagtatccttggttgaacaaattctataattgatctataaagtgattaattgatttaacaactggcaccattctt |
23763 |
T |
|
| Q |
419 |
tggtttttagattgttaattaaccacctaattactgtagtggt---ttagtttataaacttgaagagctgctgctaaagtgagaagattgagactactag |
515 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23764 |
tggtttttacattattaattaaccacctaattactgtagtggttcattagtttataaacttgaagagctgctactaaagtgagaagattgagactactag |
23863 |
T |
|
| Q |
516 |
ctgattcaatggcgttgatgggatgaaattagattttgcggacagtcaagagtagtttgatctctttg |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23864 |
ctgattcaatggcgttgatgggatgaaattagattttgcggacaatcaagagtagtttgatctctttg |
23931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 584 - 665
Target Start/End: Original strand, 11464404 - 11464485
Alignment:
| Q |
584 |
tgatgcgaaaattgatccagaagagcttgaaatcagcacacgtgacaatcaccaaggagctagtggcgtggggtcctttgct |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11464404 |
tgatgcgaaaattgatccagaagagcttgaaatcagcacacgtgacaatcaccaaggagctagtggcgtggggtcctttgct |
11464485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 584 - 665
Target Start/End: Original strand, 11459422 - 11459503
Alignment:
| Q |
584 |
tgatgcgaaaattgatccagaagagcttgaaatcagcacacgtgacaatcaccaaggagctagtggcgtggggtcctttgct |
665 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11459422 |
tgatgcgaaaattgatctagaagagcttgaaatcagcacacgtgacaatcaccaaggagctagtggcgtggggtcctttgct |
11459503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 256218 - 256101
Alignment:
| Q |
60 |
tgttcatatgcttagaaaatgaaagttacttccctttcttaaaagttgttcgtcaatactttccatcatttaaagttgagaggaagctagaaactttcta |
159 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||||||||| ||||| || |||||| ||| |||||| ||||| |||||| |||||||||||| || |
|
|
| T |
256218 |
tgttcagatgcttagcagatgaaagttacttccctttcttaaaacttgttagtaaatactgtccgtcatttgaagttaagaggatgctagaaactttgta |
256119 |
T |
|
| Q |
160 |
tgataatctagtgtagaa |
177 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
256118 |
tgataatctagagtagaa |
256101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 583
Target Start/End: Complemental strand, 21185400 - 21185300
Alignment:
| Q |
481 |
agctgctgctaaagtgagaagattgagactactagctgattcaatggcgttgatgggatgaaattagattttgcggacagtcaagagtagtttgatctct |
580 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || |||||||||||||| |||||| ||||| | ||||||| |||||||| |||| |||| |||||| |
|
|
| T |
21185400 |
agctgctgctaaagtgagaagattgaaacttctggctgattcaatggccttgatgagatgagagtagatttcaaggacagtc--gagtggtttaatctct |
21185303 |
T |
|
| Q |
581 |
ttg |
583 |
Q |
| |
|
||| |
|
|
| T |
21185302 |
ttg |
21185300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 1389923 - 1389957
Alignment:
| Q |
20 |
acatgcctaatccaatgagtgtccgtgcttcataa |
54 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1389923 |
acatgcctaatccaaggagtgtccgtgcttcataa |
1389957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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