View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12871_low_31 (Length: 253)

Name: NF12871_low_31

Description: NF12871

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12871_low_31

[»] chr3 (5 HSPs)

Alignment Details

Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 5)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 225; E-Value: 1e-124

Query Start/End: Original strand, 17 - 253

Target Start/End: Complemental strand, 24362552 - 24362316

Alignment:

Q	17	aggccaattcaatgatgtagttctttcagtagtcttcttaatctcacctgcatatatgtgtgaaatataaaacaaatagttaaactcgcagaggagcatg	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	24362552	aggccaattcaatgatgtagttctttcagtagtcttcttaatctcacctgcatatatgtgtgaaatataaaacaaatagttaaactctcagaggagcatg	24362453	T

Q	117	ttcagaatttgaacctcatataatacttggtgttttcaatttcaagtctagcttttattaaacaacatcaagtaactaagtaagatgaaatgtttggcac	216	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24362452	ttcagaatttgaacctcatataatacttggtgttttcaatttcaagtctagcgtttattaaaaaacatcaagtaactaagtaagatgaaatgtttggcac	24362353	T

Q	217	catgaaattgaatgttaatataatgaaagaagaaaca	253	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24362352	catgaaattgaatgttaatataatgaaagaagaaaca	24362316	T

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Target: chr3; HSP #2

Raw Score: 47; E-Value: 6e-18

Query Start/End: Original strand, 23 - 129

Target Start/End: Complemental strand, 24352281 - 24352175

Alignment:

Q	23	attcaatgatgtagttctttcagtagtcttcttaatctcacctgcatatatgtgtgaaatataaaacaaatagttaaactcgcagaggagcatgttcaga	122	Q
		\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\|
T	24352281	attcaaggatgaagttcttttagtactcttcttgttctcacctgcatatatgtgtggaaaataaaacaagtaattaaactcttggaagagcatattcaga	24352182	T

Q	123	atttgaa	129	Q
		\|\|\|\|\|\|\|
T	24352181	atttgaa	24352175	T

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Target: chr3; HSP #3

Raw Score: 47; E-Value: 6e-18

Query Start/End: Original strand, 26 - 92

Target Start/End: Complemental strand, 24355681 - 24355615

Alignment:

Q	26	caatgatgtagttctttcagtagtcttcttaatctcacctgcatatatgtgtgaaatataaaacaaa	92	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	24355681	caatgatgaagttcttttagcagttttcttaatctcacctgcatatatgtgtggaatataaaacaaa	24355615	T

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Target: chr3; HSP #4

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 18 - 90

Target Start/End: Complemental strand, 24370106 - 24370034

Alignment:

Q	18	ggccaattcaatgatgtagttctttcagtagtcttcttaatctcacctgcatatatgtgtgaaatataaaaca	90	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	24370106	ggccaattcattgatgaagttcttttagtagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaaca	24370034	T

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Target: chr3; HSP #5

Raw Score: 37; E-Value: 0.000000000006

Query Start/End: Original strand, 18 - 78

Target Start/End: Complemental strand, 24346582 - 24346522

Alignment:

Q	18	ggccaattcaatgatgtagttctttcagtagtcttcttaatctcacctgcatatatgtgtg	78	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	24346582	ggccaattccatgatgtagttctttcactagtcttcataacctcagctgcatatatttgtg	24346522	T

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