View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_32 (Length: 250)
Name: NF12871_low_32
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 28546812 - 28547053
Alignment:
| Q |
1 |
tatattgaggttactcaattgttgaaagtgaaagttttnnnnnnnnnnnnncacatcatacaactttattttgaagataaagatacttctatttaattca |
100 |
Q |
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| T |
28546812 |
tatattgaggttactcaattgttgaaagtgaaagttttaaaaaataaaaaacacatcatacaactttattttgaagataaagatacttctatttaattca |
28546911 |
T |
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| Q |
101 |
ttactcacattgcctccccaaggaagtcatccttagtata--tgtatcttcatccattagtctcaaatgaagtgtataattactgtctgaaattgtgaaa |
198 |
Q |
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| T |
28546912 |
ttactcacattgcctccccaaggaagtcatccttagtatatatgtatcttcatccattagtctcaaatgaagtgtataattactgtctgaaattgtgaaa |
28547011 |
T |
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| Q |
199 |
aggaagatttcattcaaatgaggatgagatcctgaacctatg |
240 |
Q |
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| T |
28547012 |
aggaagatttcattccaatgaggatgagatcctgaacctatg |
28547053 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 1089707 - 1089662
Alignment:
| Q |
118 |
ccaaggaagtcatccttagtatatgtatcttcatccattagtctca |
163 |
Q |
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| T |
1089707 |
ccaaggaagtcatccttggtaaatgtatcttcatccattagcctca |
1089662 |
T |
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