View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_33 (Length: 237)
Name: NF12871_low_33
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28546777 - 28546553
Alignment:
| Q |
1 |
tattacaaatcttttaaataatttttatttagnnnnnnn-tgcaagggggcttaa-tcatttatccttgcttgattaaaaacttgagccttgctatatgg |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28546777 |
tattacaaatcttttaaataatttttatttagaaaaaaaatgcaagggggcttaaatcatttatccttgcttgattaaaaacttgagccttgctatatgg |
28546678 |
T |
|
| Q |
99 |
tacgaggtaatatgcacacgaactgcacgacatattgatatacatgttagattttatcttattggatgctagcttataattttttcaaaataaaagacaa |
198 |
Q |
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|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28546677 |
tacgaagtaatatgcacatgaactgcacgacatattgatatacatgttagattttatcttattggatgctagcttataattttttcaaaataaaagacaa |
28546578 |
T |
|
| Q |
199 |
accaatgtaaaataaacacttagag |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
28546577 |
accaatgtaaaataaacacttagag |
28546553 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 32189390 - 32189250
Alignment:
| Q |
83 |
gagccttgctatatggtacgaggtaatatgcacacgaactgcacgacatattgatatacatgttagattttatcttattggatgctagcttataattttt |
182 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32189390 |
gagccttgctatatggtacgagataatatgcacacgaactgcacaacatattgatatacatgttagattctatcttattggatgctagcttataattttt |
32189291 |
T |
|
| Q |
183 |
tcaaaataaaagacaaaccaatgtaaaataaacacttagag |
223 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
32189290 |
tcaaaataaaagacacaccaatgtaaaataaacacttagag |
32189250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 1421063 - 1420947
Alignment:
| Q |
83 |
gagccttgctatatggtacgaggtaatatgcacacgaactgcacgacatattgatatacatgttagattttatcttattggatgctagcttataattttt |
182 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||| | |||| ||||| | ||||| | ||||| ||||| ||||||| |||||||| |
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|
| T |
1421063 |
gagccttgctatatggtacgagagaatcggcacacgaactgcacgacgtgttgacctacatatgagattctttcttaatggatactagcttctaattttt |
1420964 |
T |
|
| Q |
183 |
tcaaaataaaagacaaa |
199 |
Q |
| |
|
|||| |||||||||||| |
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|
| T |
1420963 |
tcaatataaaagacaaa |
1420947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 220
Target Start/End: Original strand, 13089778 - 13089915
Alignment:
| Q |
83 |
gagccttgctatatggtacgaggtaatatgcacacgaactgcacgacatattgatatacatgttagattttatcttattggatgctagcttataattttt |
182 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||||||||||| | ||||| ||||||| ||||| | ||||| ||||| |||||||||||||||| |
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|
| T |
13089778 |
gagccttgctatatggtacgagagaatcggcgcacgaactgcacgacgtgttgatctacatgtgagattctctcttaatggatactagcttataattttt |
13089877 |
T |
|
| Q |
183 |
tcaaaataaaagacaaaccaatgtaaaataaacactta |
220 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||||| |
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|
| T |
13089878 |
tcaatataaaagacaaaagaagataaaataaacactta |
13089915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 47196301 - 47196161
Alignment:
| Q |
82 |
tgagccttgctatatggtacgaggtaatatgcacacgaactgcacgacatattgatatacatgttagattttatcttattggatgctagcttataatttt |
181 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||||||||||||||| | ||||| ||||||| ||||| | ||||| ||||| ||||||||||| ||| |
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|
| T |
47196301 |
tgagccttgctatatggtatgagagaatcggcacacgaactgcacgacgtgttgatctacatgtgagattctctcttaatggatactagcttataacttt |
47196202 |
T |
|
| Q |
182 |
ttcaaaataaaagacaaaccaatgtaaaataaacacttaga |
222 |
Q |
| |
|
||||| |||||||||||| || ||||||||||||||||| |
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|
| T |
47196201 |
ttcaatataaaagacaaaagaagataaaataaacacttaga |
47196161 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 966441 - 966581
Alignment:
| Q |
82 |
tgagccttgctatatggtacgaggtaatatgcacacgaactgcacgacatattgatatacatgttagattttatcttattggatgctagcttataatttt |
181 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||| ||| | || || ||||||| ||||| | ||||| ||||| ||| |||||||||| |
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|
| T |
966441 |
tgagccttgctatatggtacgagagaatcggcacacgaactgcatgacgtgttaatctacatgtgagattctctcttaatggatactaatttataatttt |
966540 |
T |
|
| Q |
182 |
ttcaaaataaaagacaaaccaatgtaaaataaacacttaga |
222 |
Q |
| |
|
|| || |||||||||||| || ||||||||||||||||| |
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|
| T |
966541 |
tttaatataaaagacaaaagaagataaaataaacacttaga |
966581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 17009972 - 17009871
Alignment:
| Q |
121 |
ctgcacgacatattgatatacatgttagattttatcttattggatgctagcttataattttttcaaaataaaagacaaaccaatgtaaaataaacactta |
220 |
Q |
| |
|
||||||||| | ||||| ||||||| ||||| | ||||| || || ||||||| |||||||||||| |||||||||||| || ||||||||||||||| |
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| T |
17009972 |
ctgcacgacgtgttgatctacatgtgagattctctcttaatgaatactagcttgtaattttttcaatataaaagacaaaagaagataaaataaacactta |
17009873 |
T |
|
| Q |
221 |
ga |
222 |
Q |
| |
|
|| |
|
|
| T |
17009872 |
ga |
17009871 |
T |
|
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