View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12871_low_5 (Length: 556)

Name: NF12871_low_5
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12871_low_5
NF12871_low_5
[»] chr2 (7 HSPs)
chr2 (191-556)||(14373434-14373800)
chr2 (15-143)||(14373925-14374053)
chr2 (137-190)||(14373846-14373899)
chr2 (497-556)||(43586012-43586071)
chr2 (526-556)||(13501085-13501115)
chr2 (526-555)||(24067275-24067304)
chr2 (496-556)||(44984657-44984717)
[»] chr7 (5 HSPs)
chr7 (497-556)||(5937428-5937487)
chr7 (497-556)||(22801748-22801807)
chr7 (511-556)||(1885580-1885625)
chr7 (526-556)||(25956467-25956497)
chr7 (511-556)||(2144546-2144591)
[»] chr6 (7 HSPs)
chr6 (505-555)||(10031571-10031621)
chr6 (511-556)||(6751889-6751934)
chr6 (15-56)||(12078336-12078377)
chr6 (511-556)||(19369824-19369869)
chr6 (526-556)||(785462-785492)
chr6 (499-556)||(5579649-5579706)
chr6 (501-550)||(31430277-31430326)
[»] chr8 (5 HSPs)
chr8 (503-555)||(27733846-27733898)
chr8 (497-556)||(26915247-26915306)
chr8 (497-556)||(42874515-42874574)
chr8 (526-556)||(31119109-31119139)
chr8 (497-554)||(22600522-22600579)
[»] chr5 (4 HSPs)
chr5 (510-550)||(42192282-42192322)
chr5 (497-556)||(10010547-10010606)
chr5 (511-553)||(30080511-30080553)
chr5 (511-556)||(21319952-21319997)
[»] chr4 (5 HSPs)
chr4 (511-555)||(13307884-13307928)
chr4 (505-556)||(13117430-13117481)
chr4 (526-556)||(10164861-10164891)
chr4 (526-556)||(37496726-37496756)
chr4 (505-555)||(44362667-44362717)
[»] chr1 (3 HSPs)
chr1 (505-556)||(28170383-28170433)
chr1 (497-556)||(40176596-40176655)
chr1 (497-556)||(24176812-24176872)
[»] scaffold0024 (1 HSPs)
scaffold0024 (497-555)||(18116-18174)
[»] chr3 (2 HSPs)
chr3 (498-556)||(49179722-49179780)
chr3 (511-556)||(14338490-14338535)
[»] scaffold0314 (1 HSPs)
scaffold0314 (511-556)||(8955-9000)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 191 - 556
Target Start/End: Complemental strand, 14373800 - 14373434
Alignment:
Q  191 tcaattgatcaccataagcaaacaaaaagctccttctgtcaatggtaaaagaatacaaaagacaaa-gtctagcaacaaaaatctatgtgccactaaaat 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14373800 tcaattgatcaccataagcaaacaaaaagctccttctgtcaatggtaaaagaatacaaaagacaaaagtctagcaacaaaaatctatgtgccactaaaat 14373701  T
Q  290 caatgtcctagtttgcttgcttccaannnnnnnnnnnnnnntactcaatcaagtgtcatcgacaatgacacttattattataatacttaaaaccattgat 389  Q
    ||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14373700 caatgtcctagtttgcttgcttccaatctctctctctctcttactcaatcaagtgtcatcgacaatgacacttattattataatacttaaaaccattgat 14373601  T
Q  390 taatgcaagaggctaattaactaaaactaacacttcacaaaacttgatgtaaaatcacaccaaaggtgcatctatattaaatcccagcctgtaattatct 489  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14373600 taatgcaagaggctaattaactataactaacacttcacaaaacttgatgtaaaatcacaccaaaggtgcatctatattagatcccagcctgtaattatct 14373501  T
Q  490 atgaagcacacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14373500 atgaagcacacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtc 14373434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 14374053 - 14373925
Alignment:
Q  15 cacagagaggtcaagaaagataatctaacttcagacttcacagtagctaaatgccaagcatctctagttgtaaattcatgtatttcattccaacnnnnnn 114  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  14374053 cacagagaggccaagaaagataatctaacttcagacttcacagtagctaaatgccaagcatctctagttgtaaattcatgtatttcattccaacaaaaaa 14373954  T
Q  115 ngacaaaattatattcagttcctgtttgg 143  Q
     ||||||||||||||||||||||||||||    
T  14373953 agacaaaattatattcagttcctgtttgg 14373925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 14373899 - 14373846
Alignment:
Q  137 tgtttggaaggtctttagacatgaaatagggaagctacaatttctagagtttag 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14373899 tgtttagaaggtctttagacatgaaatagggaagctacaatttctagagtttag 14373846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 497 - 556
Target Start/End: Complemental strand, 43586071 - 43586012
Alignment:
Q  497 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||  ||||||||||||   |||||||||||||||||||||||||||||||    
T  43586071 acacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtc 43586012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 526 - 556
Target Start/End: Complemental strand, 13501115 - 13501085
Alignment:
Q  526 aatgacataattcaatgtaatcacaagtgtc 556  Q
    |||||||||||||||||||||||||||||||    
T  13501115 aatgacataattcaatgtaatcacaagtgtc 13501085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 555
Target Start/End: Original strand, 24067275 - 24067304
Alignment:
Q  526 aatgacataattcaatgtaatcacaagtgt 555  Q
    ||||||||||||||||||||||||||||||    
T  24067275 aatgacataattcaatgtaatcacaagtgt 24067304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 556
Target Start/End: Complemental strand, 44984717 - 44984657
Alignment:
Q  496 cacacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    |||||||| ||||| || |||||||||   ||||| |||||||||||| ||||||||||||    
T  44984717 cacacgtcgacacctatcaaattttgaaaaaatgatataattcaatgtgatcacaagtgtc 44984657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 497 - 556
Target Start/End: Complemental strand, 5937487 - 5937428
Alignment:
Q  497 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||  ||||||||||||   |||||||||||||||||||||||||||||||    
T  5937487 acacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtc 5937428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 556
Target Start/End: Complemental strand, 22801807 - 22801748
Alignment:
Q  497 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||| || |||||||||   |||||||||||||| ||||||||||||||||    
T  22801807 acacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtc 22801748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 511 - 556
Target Start/End: Original strand, 1885580 - 1885625
Alignment:
Q  511 ataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||   |||||||||||||||||||||||||||||||    
T  1885580 ataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtc 1885625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 526 - 556
Target Start/End: Original strand, 25956467 - 25956497
Alignment:
Q  526 aatgacataattcaatgtaatcacaagtgtc 556  Q
    |||||||||||||||||||||||||||||||    
T  25956467 aatgacataattcaatgtaatcacaagtgtc 25956497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 556
Target Start/End: Complemental strand, 2144591 - 2144546
Alignment:
Q  511 ataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||   ||||||||||||||||||||||||| |||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatcacacgtgtc 2144546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 555
Target Start/End: Original strand, 10031571 - 10031621
Alignment:
Q  505 acaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgt 555  Q
    ||||| ||||||||||||   ||||||||||||||||||||||||||||||    
T  10031571 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 511 - 556
Target Start/End: Complemental strand, 6751934 - 6751889
Alignment:
Q  511 ataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||   |||||||||||||||||||||||||||||||    
T  6751934 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgtc 6751889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 12078336 - 12078377
Alignment:
Q  15 cacagagaggtcaagaaagataatctaacttcagacttcaca 56  Q
    |||||||||| |||||||||||||||||| ||||||||||||    
T  12078336 cacagagaggccaagaaagataatctaacatcagacttcaca 12078377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 511 - 556
Target Start/End: Original strand, 19369824 - 19369869
Alignment:
Q  511 ataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||   |||||||||||||||||||||||||||||||    
T  19369824 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgtc 19369869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 526 - 556
Target Start/End: Complemental strand, 785492 - 785462
Alignment:
Q  526 aatgacataattcaatgtaatcacaagtgtc 556  Q
    |||||||||||||||||||||||||||||||    
T  785492 aatgacataattcaatgtaatcacaagtgtc 785462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 556
Target Start/End: Original strand, 5579649 - 5579706
Alignment:
Q  499 acgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||| ||||| ||||||||||||   ||||||||| ||||||||| |||||||||||    
T  5579649 acgtcgacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtc 5579706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 550
Target Start/End: Original strand, 31430277 - 31430326
Alignment:
Q  501 gtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcaca 550  Q
    ||||||||||||||||||||||   |||||||| ||| ||||||||||||    
T  31430277 gtcaacaccaataaaattttgagaaaatgacatgattaaatgtaatcaca 31430326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 555
Target Start/End: Original strand, 27733846 - 27733898
Alignment:
Q  503 caacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgt 555  Q
    ||||||| ||||||||||||   ||||| ||||||||||||||||||||||||    
T  27733846 caacaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgt 27733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 556
Target Start/End: Complemental strand, 26915306 - 26915247
Alignment:
Q  497 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||| ||||  ||||||||||||   |||||||||||| ||||||||||||||||||    
T  26915306 acacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtc 26915247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 556
Target Start/End: Original strand, 42874515 - 42874574
Alignment:
Q  497 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||| |||||  ||| |||||||   |||||||||||||||||||||||||||||||    
T  42874515 acacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtc 42874574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 526 - 556
Target Start/End: Original strand, 31119109 - 31119139
Alignment:
Q  526 aatgacataattcaatgtaatcacaagtgtc 556  Q
    |||||||||||||||||||||||||||||||    
T  31119109 aatgacataattcaatgtaatcacaagtgtc 31119139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 554
Target Start/End: Original strand, 22600522 - 22600579
Alignment:
Q  497 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtg 554  Q
    |||| ||||||||||||||||||  |   |||||||||||||||| ||||||||||||    
T  22600522 acacatcaacaccaataaaatttaaagaaaatgacataattcaatataatcacaagtg 22600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 42192282 - 42192322
Alignment:
Q  510 aataaaattttgacgcaatgacataattcaatgtaatcaca 550  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  42192282 aataaaattttgagacaatgacataattcaatgtaatcaca 42192322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 556
Target Start/End: Original strand, 10010547 - 10010606
Alignment:
Q  497 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    |||| ||||||| |||||||||||||   |||||||||||||| |||||||||| |||||    
T  10010547 acacctcaacactaataaaattttgaaaaaatgacataattcattgtaatcacatgtgtc 10010606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 553
Target Start/End: Complemental strand, 30080553 - 30080511
Alignment:
Q  511 ataaaattttgacgcaatgacataattcaatgtaatcacaagt 553  Q
    ||||||||||||   ||||||||||||||||||||||||||||    
T  30080553 ataaaattttgagaaaatgacataattcaatgtaatcacaagt 30080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 556
Target Start/End: Complemental strand, 21319997 - 21319952
Alignment:
Q  511 ataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||   ||||| |||||||||||||||||||||||||    
T  21319997 ataaaattttgaaaaaatgatataattcaatgtaatcacaagtgtc 21319952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 511 - 555
Target Start/End: Original strand, 13307884 - 13307928
Alignment:
Q  511 ataaaattttgacgcaatgacataattcaatgtaatcacaagtgt 555  Q
    ||||||||||||   ||||||||||||||||||||||||||||||    
T  13307884 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 13307928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 556
Target Start/End: Original strand, 13117430 - 13117481
Alignment:
Q  505 acaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||||| ||   ||||||| |||||||||||||||||||||||    
T  13117430 acaccaataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtc 13117481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 526 - 556
Target Start/End: Complemental strand, 10164891 - 10164861
Alignment:
Q  526 aatgacataattcaatgtaatcacaagtgtc 556  Q
    |||||||||||||||||||||||||||||||    
T  10164891 aatgacataattcaatgtaatcacaagtgtc 10164861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 526 - 556
Target Start/End: Original strand, 37496726 - 37496756
Alignment:
Q  526 aatgacataattcaatgtaatcacaagtgtc 556  Q
    |||||||||||||||||||||||||||||||    
T  37496726 aatgacataattcaatgtaatcacaagtgtc 37496756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 555
Target Start/End: Original strand, 44362667 - 44362717
Alignment:
Q  505 acaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgt 555  Q
    ||||| ||||||||||||   |||||||||||| |||||||||||||||||    
T  44362667 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44362717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 556
Target Start/End: Original strand, 28170383 - 28170433
Alignment:
Q  505 acaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||||||||   ||||||||||||||||||||| |||||||||    
T  28170383 acaccaataaaattttgaaa-aatgacataattcaatgtaataacaagtgtc 28170433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 556
Target Start/End: Original strand, 40176596 - 40176655
Alignment:
Q  497 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||| ||||||||||||   |||||| | |||||||||||||||| |||||    
T  40176596 acacgtcaacaccgataaaattttgagaaaatgacttcattcaatgtaatcacatgtgtc 40176655  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 556
Target Start/End: Original strand, 24176812 - 24176872
Alignment:
Q  497 acacgtcaacaccaataaaattttga-cgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||| ||||||||||||    |||||||| ||| ||||||||||||||||||    
T  24176812 acacgtcaacaccgataaaattttgagaaaaatgacatgatttaatgtaatcacaagtgtc 24176872  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 555
Target Start/End: Complemental strand, 18174 - 18116
Alignment:
Q  497 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgt 555  Q
    ||||||| ||||| ||||||||||||   ||| |||||||||||||||||| |||||||    
T  18174 acacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgt 18116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 556
Target Start/End: Complemental strand, 49179780 - 49179722
Alignment:
Q  498 cacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    |||||| ||||| ||||||||||||   | ||||||||||| |||||||||||||||||    
T  49179780 cacgtcgacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtc 49179722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 556
Target Start/End: Complemental strand, 14338535 - 14338490
Alignment:
Q  511 ataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||   |||||||||||||||||||||||||| ||||    
T  14338535 ataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtc 14338490  T

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Target: scaffold0314 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 556
Target Start/End: Original strand, 8955 - 9000
Alignment:
Q  511 ataaaattttgacgcaatgacataattcaatgtaatcacaagtgtc 556  Q
    ||||||||||||   ||||||||||||||| |||||||||||||||    
T  8955 ataaaattttgagaaaatgacataattcaacgtaatcacaagtgtc 9000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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