View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_8 (Length: 500)
Name: NF12871_low_8
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Original strand, 14767180 - 14767643
Alignment:
| Q |
15 |
ctgtggatgaaaatgaatttctgtcgagcttctcatgggaagcatttcccttcatcattgctgctg-ttaatccatatttttgctggatcatattttctg |
113 |
Q |
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| T |
14767180 |
ctgtggatgaaaatgaatttctgtcgagcttctcatgggaagcatatcccttcattgttgctgttaattaatccatgtttttgctggatcatattttctg |
14767279 |
T |
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| Q |
114 |
atgactgctgtatattaatctgtcttttggtagttgaatgattagtttttcatagtcaaataccctatgaatttactgcttctgattgaatgtagttctg |
213 |
Q |
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| T |
14767280 |
atgactgctgtatattaatctgtcttttggtagttgaatgatcagtttttcatagtcaaataccctatgaatttactgcttctgattgaatgtagttctg |
14767379 |
T |
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| Q |
214 |
tgtctacttcaatgtataaaattttcatgaaaacaactatcagtgtcaataagtccatgttctttgttctcttttttgtgttcttgtaaaatgacaatgt |
313 |
Q |
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| T |
14767380 |
tgtctacttcaatgtataaaatgttcatgaaaacaactatcagtgtccttgagttc-------ttgttctcttttttgtgttcttgtaaaatgacaatgt |
14767472 |
T |
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| Q |
314 |
tttaaaccattattttaattataatttcaggatgaactgagagatgcagtgttgcttgtgtttgccaacaaacaagatcttcccaatgcaatgaatgcag |
413 |
Q |
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| T |
14767473 |
tttaaaccattattttaattataatttcaggatgaactgagagatgcagtgttgcttgtgtttgccaacaaacaagatcttcccaatgcaatgaatgcag |
14767572 |
T |
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| Q |
414 |
ctgagattactgacaagctgggtctccactctctcagacagcgccactggtaaataatttgataatgctac |
484 |
Q |
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| T |
14767573 |
ctgagattactgacaagctgggtctccactctctcagacagcgccactggtaaatgatttgataatgctac |
14767643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 324 - 476
Target Start/End: Original strand, 14762187 - 14762339
Alignment:
| Q |
324 |
tattttaattataatttcaggatgaactgagagatgcagtgttgcttgtgtttgccaacaaacaagatcttcccaatgcaatgaatgcagctgagattac |
423 |
Q |
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| T |
14762187 |
tattttaattatcttttcaggatgaactgagagatgcagttttgcttgtgttcgccaacaaacaagatcttccaaatgcaatgaatgctgccgaaattac |
14762286 |
T |
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| Q |
424 |
tgacaagctgggtctccactctctcagacagcgccactggtaaataatttgat |
476 |
Q |
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| T |
14762287 |
tgacaagttgggtcttcactcgctgagacagcgccactggtaagtattttgat |
14762339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 341 - 467
Target Start/End: Original strand, 38694461 - 38694587
Alignment:
| Q |
341 |
caggatgaactgagagatgcagtgttgcttgtgtttgccaacaaacaagatcttcccaatgcaatgaatgcagctgagattactgacaagctgggtctcc |
440 |
Q |
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| T |
38694461 |
caggatgaattgagagatgcagtgcttctagtttttgctaacaaacaagatcttccaaatgctatgaatgctgctgagataactgataagcttggtcttc |
38694560 |
T |
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| Q |
441 |
actctctcagacagcgccactggtaaa |
467 |
Q |
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| T |
38694561 |
actctctccgtcagcgtcactggtaaa |
38694587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 411
Target Start/End: Complemental strand, 52166335 - 52166277
Alignment:
| Q |
353 |
agagatgcagtgttgcttgtgtttgccaacaaacaagatcttcccaatgcaatgaatgc |
411 |
Q |
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| T |
52166335 |
agagatgttgtgttgctagtttttgctaacaaacaagatcttccaaatgcaatgaatgc |
52166277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 465
Target Start/End: Original strand, 950329 - 950456
Alignment:
| Q |
338 |
tttcaggatgaactgagagatgcagtgttgcttgtgtttgccaacaaacaagatcttcccaatgcaatgaatgcagctgagattactgacaagctgggtc |
437 |
Q |
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| T |
950329 |
tttcaggatgaacttagagatgctgttttgcttgtttttgccaacaaacaagatcttccaaatgcaatgaatgctgcagaaataactgacaaacttggac |
950428 |
T |
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| Q |
438 |
tccactctctcagacagcgccactggta |
465 |
Q |
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| T |
950429 |
ttcattctctccgccaacgccactggta |
950456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 340 - 438
Target Start/End: Complemental strand, 45053454 - 45053356
Alignment:
| Q |
340 |
tcaggatgaactgagagatgcagtgttgcttgtgtttgccaacaaacaagatcttcccaatgcaatgaatgcagctgagattactgacaagctgggtct |
438 |
Q |
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| T |
45053454 |
tcaggatgagttgagagatgctgtgcttcttgtttttgcaaacaagcaagatcttccaaatgctatgaatgctgctgaaataactgataagctaggtct |
45053356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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