View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12871_low_9 (Length: 493)
Name: NF12871_low_9
Description: NF12871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12871_low_9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 174 - 493
Target Start/End: Original strand, 17584485 - 17584804
Alignment:
| Q |
174 |
tcctctactaattgcagttttgattctaactactgattgtgtattaattgctataagatcttcaattctaatatcttggattccacctgacatttcactt |
273 |
Q |
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| T |
17584485 |
tcctctaccaactgcagttttgattctaatagctgattatgtattcattgctgtgagatcttcaattctaatatcttggattccaccagacatttcactg |
17584584 |
T |
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| Q |
274 |
cctaatgcaatcatagcactatcaggtgatacacattttagccttctaattattatgtgttggcttggaattccaaattggattccatattcattccaac |
373 |
Q |
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| T |
17584585 |
cctaatgcaatcatagcactatcaggtgatacacatttaagccttgtaattattatgtgttggcttggcattccaaattggattccatattcattccaac |
17584684 |
T |
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| Q |
374 |
cactttttatggcaacacaatcatcaccagaaactatttgacaatcttcaatcctcacattggtacaagaacctgtataaatggaaaatatatattttac |
473 |
Q |
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| T |
17584685 |
cactttttatagcaacacaatcatcaccagaaactatttgacaatcttcaatcctcacattggtagaagaatctgtataaatggaaaatatatattttac |
17584784 |
T |
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| Q |
474 |
aatctttaaaatatcaaaca |
493 |
Q |
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|||||||||||||||||||| |
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| T |
17584785 |
aatctttaaaatatcaaaca |
17584804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 17584301 - 17584461
Alignment:
| Q |
18 |
caagtttttctgaatatgtaacattatctgccataacatcactataattaatttcagtaatgttaggaagtgcttttggatcaaagctagggtcaggatg |
117 |
Q |
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| T |
17584301 |
caagtttttctgaatatgtaacattatctgccataacatcactatgattaatttcagtaatgttaggaagtgcttttggatcaaagctagggtcaggatg |
17584400 |
T |
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| Q |
118 |
tgatccatatgaacctgtcatccaaaaaacatatttcatattgttttcaaattcattcctcta |
180 |
Q |
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| T |
17584401 |
tgatccatatgaacctgtcatccaaaacacatatttc--attgttttcaatttcattcctcta |
17584461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 232 - 410
Target Start/End: Original strand, 45075065 - 45075243
Alignment:
| Q |
232 |
tcttcaattctaatatcttggattccacctgacatttcacttcctaatgcaatcatagcactatcaggtgatacacattttagccttctaattattatgt |
331 |
Q |
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| T |
45075065 |
tcttcaactctaacatcttggattccacctgacatttcactgcctaatgcaaccattgcacttttaggggatatacatgttagccttcttatgattattt |
45075164 |
T |
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| Q |
332 |
gttggcttggaattccaaattggattccatattcattccaaccactttttatggcaacacaatcatcaccagaaactat |
410 |
Q |
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| T |
45075165 |
gttgagatggctttccaaatttgattccatactcatcccatccactttttattgcaatacaatcatcaccagaaactat |
45075243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 231 - 404
Target Start/End: Original strand, 45078294 - 45078467
Alignment:
| Q |
231 |
atcttcaattctaatatcttggattccacctgacatttcacttcctaatgcaatcatagcactatcaggtgatacacattttagccttctaattattatg |
330 |
Q |
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| T |
45078294 |
atcttcaattctaacatcttggattccacctgacatttcactgcctaatgcaaccatagcactatcaggggatatacaagttaaccttcttatgattatt |
45078393 |
T |
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| Q |
331 |
tgttggcttggaattccaaattggattccatattcattccaaccactttttatggcaacacaatcatcaccaga |
404 |
Q |
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| T |
45078394 |
tgttgtgatggcattccaactttaattccatactcatcccatccactttttattgcaatgcaatcatcgccaga |
45078467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 190 - 404
Target Start/End: Original strand, 45067463 - 45067677
Alignment:
| Q |
190 |
gttttgattctaactactgattgtgtattaattgctataagatcttcaattctaatatcttggattccacctgacatttcacttcctaatgcaatcatag |
289 |
Q |
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|||||||||||||| |||||| ||| || |||||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |
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| T |
45067463 |
gttttgattctaacagctgattctgtgttgattgctgtgatgtcttcaattctaatatcttggattccacctgacatttcactgcctaatgcaaccatcg |
45067562 |
T |
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| Q |
290 |
cactatcaggtgatacacattttagccttctaattattatgtgttggcttggaattccaaattggattccatattcattccaaccactttttatggcaac |
389 |
Q |
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| T |
45067563 |
cacttttaggggatatacatgttagccttcttacgattatcttttgtgatggctttccaactttgattccatacccatccaatccacttttaatcgcaat |
45067662 |
T |
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| Q |
390 |
acaatcatcaccaga |
404 |
Q |
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| T |
45067663 |
acaatcatcaccaga |
45067677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 187 - 407
Target Start/End: Original strand, 45082546 - 45082766
Alignment:
| Q |
187 |
gcagttttgattctaactactgattgtgtattaattgctataagatcttcaattctaatatcttggattccacctgacatttcacttcctaatgcaatca |
286 |
Q |
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|||| |||||| ||||| |||||| |||||| ||||| | | ||||||||||| | ||||||||||||||||||||||||||| |||||||||| || |
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| T |
45082546 |
gcagatttgatcctaacagctgattctgtattgattgccgtgacgtcttcaattcttacatcttggattccacctgacatttcactgcctaatgcaacca |
45082645 |
T |
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| Q |
287 |
tagcactatcaggtgatacacattttagccttctaattattatgtgttggcttggaattccaaattggattccatattcattccaaccactttttatggc |
386 |
Q |
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| T |
45082646 |
aagcacttttaggggatatacatgttagccttcttacgattatattttgtgatggcttgccaactttgattccatactcatcccatccacttttaattgc |
45082745 |
T |
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| Q |
387 |
aacacaatcatcaccagaaac |
407 |
Q |
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| T |
45082746 |
aatacaatcatcaccagaaac |
45082766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 45067376 - 45067420
Alignment:
| Q |
131 |
cctgtcatccaaaaaacatatttcatattgttttcaaattcattcct |
177 |
Q |
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| T |
45067376 |
cctgtcatccaaaaaacatatttc--attgtgttcaaattcattcct |
45067420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 45078156 - 45078210
Alignment:
| Q |
121 |
tccatatgaacctgtcatccaaaaaacatatttcatattgttttcaaattcattcct |
177 |
Q |
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| T |
45078156 |
tccataagaacctgtcatccaaaacacatatttc--attgtattcaaatccattcct |
45078210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 404
Target Start/End: Original strand, 34504860 - 34505012
Alignment:
| Q |
252 |
gattccacctgacatttcacttcctaatgcaatcatagcactatcaggtgatacacattttagccttctaattattatgtgttggcttggaattccaaat |
351 |
Q |
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| T |
34504860 |
gattccacccgacatttcactccctaaagcaatcatagcactatctggggatatacatgttagccttcttatgattatttgttttgatggctttccgaat |
34504959 |
T |
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| Q |
352 |
tggattccatattcattccaaccactttttatggcaacacaatcatcaccaga |
404 |
Q |
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| T |
34504960 |
ttaattccatattgatcccatccactttttatcgcaatacaatcatcaccaga |
34505012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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