View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12872_high_11 (Length: 318)

Name: NF12872_high_11
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12872_high_11
NF12872_high_11
[»] chr4 (3 HSPs)
chr4 (195-307)||(1959754-1959867)
chr4 (73-181)||(1959454-1959562)
chr4 (19-54)||(1959380-1959415)
[»] chr2 (5 HSPs)
chr2 (203-272)||(39748664-39748733)
chr2 (203-272)||(26978750-26978819)
chr2 (203-272)||(27020443-27020512)
chr2 (203-272)||(27087864-27087933)
chr2 (87-175)||(39747424-39747512)
[»] chr8 (1 HSPs)
chr8 (203-272)||(11632298-11632367)
[»] chr6 (1 HSPs)
chr6 (203-272)||(34681145-34681214)


Alignment Details
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 1959754 - 1959867
Alignment:
Q  195 gtattttg-tgacatagcatctccaactttgattaccttattctcaatctcaatggcttcatctcttaacttttctattgagcaatactacccatcctct 293  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1959754 gtattttgatgacatagcatctccaactttgattaccttattctcaatttcaatggcttcatctcttaacttttctattgagcaatgctacccatcctct 1959853  T
Q  294 aaattcctcttcat 307  Q
    ||||||||||||||    
T  1959854 aaattcctcttcat 1959867  T

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Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 1959454 - 1959562
Alignment:
Q  73 acgtaaattacaagttttgtagttgcagaggttgtgatcgaattctctgcaacttcttatggtattgtatagtttagatcatcatgacaattcacatcat 172  Q
    |||||||||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1959454 acgtaaattataagttttgtaattgctgaggttgtggtcgaattctctgcaacttcttatggtattgtatagtttagatcatcatgacaattcacatcat 1959553  T
Q  173 cagtaaatc 181  Q
    |||||||||    
T  1959554 cagtaaatc 1959562  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 1959380 - 1959415
Alignment:
Q  19 ctaattactacacaaatagtgtagcaggtgttagtt 54  Q
    ||||||||||||||||||||||||||||||| ||||    
T  1959380 ctaattactacacaaatagtgtagcaggtgtgagtt 1959415  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 39748664 - 39748733
Alignment:
Q  203 tgacatagcatctccaactttgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39748664 tgacatagcatctccaactttgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 39748733  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 26978819 - 26978750
Alignment:
Q  203 tgacatagcatctccaactttgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 272  Q
    |||||||| || |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||    
T  26978819 tgacatagtatttccaactttgataacttcattctcaatctcaatggcttcatctcttaacttttctatt 26978750  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 27020512 - 27020443
Alignment:
Q  203 tgacatagcatctccaactttgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 272  Q
    |||||||| ||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||    
T  27020512 tgacatagtatctccaactttgataacttcattctcaatctcaatggcttcctctcttaacttttctatt 27020443  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 27087864 - 27087933
Alignment:
Q  203 tgacatagcatctccaactttgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 272  Q
    |||||||||||||||||||||||| || | ||| ||||||||||||| ||||||||||||||||||||||    
T  27087864 tgacatagcatctccaactttgatcacttcattttcaatctcaatggtttcatctcttaacttttctatt 27087933  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 39747424 - 39747512
Alignment:
Q  87 ttttgtagttgcagaggttgtgatcgaattctctgcaacttcttatggtattgtatagtttagatcatcatgacaattcacatcatcag 175  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| ||| |||| | ||| | |||||||| | ||||| ||||||||||    
T  39747424 ttttgtagttgtagaggttgtgatcgaattctctgcaaattcttctggaattgaaaagtctggatcatcaaggcaatttacatcatcag 39747512  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 11632367 - 11632298
Alignment:
Q  203 tgacatagcatctccaactttgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 272  Q
    |||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||||||||    
T  11632367 tgacatagcatctccaactttgatcacttcattttcaatctcaatggcttcatctcttaacttttctatt 11632298  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 34681214 - 34681145
Alignment:
Q  203 tgacatagcatctccaactttgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 272  Q
    |||||||| || |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||    
T  34681214 tgacatagtatttccaactttgataacttcattctcaatctcaatggcttcatctcttaacttttctatt 34681145  T

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