View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12872_high_13 (Length: 276)

Name: NF12872_high_13
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12872_high_13
NF12872_high_13
[»] chr4 (1 HSPs)
chr4 (91-272)||(41787325-41787510)
[»] chr1 (2 HSPs)
chr1 (91-263)||(13098305-13098480)
chr1 (91-167)||(13110721-13110798)
[»] scaffold1171 (1 HSPs)
scaffold1171 (155-266)||(1219-1331)
[»] chr3 (4 HSPs)
chr3 (163-266)||(14770262-14770368)
chr3 (183-236)||(11962281-11962334)
chr3 (90-131)||(14770378-14770419)
chr3 (183-247)||(54717567-54717628)
[»] chr2 (1 HSPs)
chr2 (183-236)||(7538118-7538171)
[»] chr6 (2 HSPs)
chr6 (192-234)||(21003788-21003830)
chr6 (183-247)||(28932485-28932546)
[»] chr8 (2 HSPs)
chr8 (183-247)||(3340473-3340534)
chr8 (183-247)||(43657895-43657956)
[»] chr7 (1 HSPs)
chr7 (183-247)||(30086153-30086214)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 91 - 272
Target Start/End: Original strand, 41787325 - 41787510
Alignment:
Q  91 ccccaatttcccaaatctgcaaatcgacctcaatccacctt-ttctgcaatcgttgtccttgtttgatttcctcctcaaaatcaagttcaatttcctcct 189  Q
    |||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||||| ||||||||||    
T  41787325 ccccaatttcccaaatatgcaaatcgacctcaatccaccttcttctccaatcgttgtacttgttcgatttcctcctcaaaatcaagttcgatttcctcct 41787424  T
Q  190 ccttc---tccaatcgttgtccttgtttctttcttctcaaatcgatttcgatttcgttctggccttctgtttgttcatctcactcg 272  Q
    |||||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  41787425 ccttcttctccaatcgttgtccttgtttctttcttctcaaatcgatttcgatttcattctggccttctgtttgttcatctgactcg 41787510  T

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Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 91 - 263
Target Start/End: Original strand, 13098305 - 13098480
Alignment:
Q  91 ccccaatttcccaaatctgcaaatcgacctcaatccacctt-ttctgcaatcgttgtccttgtttgatttcctcctcaaaatcaagttcaatttcctcct 189  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  13098305 ccccaatttcccaaatctgcaaatccacctcaatccaccttcttctccaatcgttgtccttgttcgatttcctcctcaaa-tcaagttcgatttcctcct 13098403  T
Q  190 ccttct---ccaatcgttgtccttgtttctttcttctcaaatcgatttcgatttcgttctggccttctgtttgttca 263  Q
    ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13098404 ccttcttgtccaatcgttgtccttgtttctttcttctcaaatcgatttcgatttcgttctggccttctgtttgttca 13098480  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 13110721 - 13110798
Alignment:
Q  91 ccccaatttcccaaatctgcaaatcgacctcaatccacctt-ttctgcaatcgttgtccttgtttgatttcctcctca 167  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||    
T  13110721 ccccaatttcccaaatctgcaaatcgacctcaatccaccttcttctccaatcgttgtccttgttcgatttcctcctca 13110798  T

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Target: scaffold1171 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 1219 - 1331
Alignment:
Q  155 gatttcctcctcaaaatcaagttcaatttcctcctccttctccaatcgttgtccttgtttctttcttctcaaatcgatttcgatttc-gttctggccttc 253  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||| || |   ||||||||||    
T  1219 gatttcctcctcaaaatcaagttcgatttcctcctccttctccaatcgttctccttgtttgtttcttctcaaatcaatttcgtttgctcatctggccttc 1318  T
Q  254 tgtttgttcatct 266  Q
     ||||||||||||    
T  1319 ggtttgttcatct 1331  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 14770368 - 14770262
Alignment:
Q  163 cctcaaaatcaagttcaatttcctcctcctt---ctccaatcgttgtccttgtttctttcttctcaaatcgatttcgatttcgttctggccttctgtttg 259  Q
    ||||||||| |||||  |||||||||| |||   |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||    
T  14770368 cctcaaaattaagtttgatttcctccttcttattctccaatcattgtccttgtttctttcttcttaaatcgatttcgatttcgttatggccttctatttg 14770269  T
Q  260 ttcatct 266  Q
    |||||||    
T  14770268 ttcatct 14770262  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 11962281 - 11962334
Alignment:
Q  183 tcctcctccttctccaatcgttgtccttgtttctttcttctcaaatcgatttcg 236  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  11962281 tcctccttcttctccaatcgttctccttgtttgtttcttctcaaatcgatttcg 11962334  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 14770419 - 14770378
Alignment:
Q  90 tccccaatttcccaaatctgcaaatcgacctcaatccacctt 131  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  14770419 tccccaatttccaaaatctgcaaatcgacctcaatccacctt 14770378  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 54717567 - 54717628
Alignment:
Q  183 tcctcctccttctccaatcgttgtccttgtttctttcttctcaaatcgatttcgatttcgttctg 247  Q
    ||||||| |||||| |||||||||||||   ||||||||||||| ||||||||||  ||||||||    
T  54717567 tcctccttcttctcaaatcgttgtcctt---tctttcttctcaattcgatttcgaaatcgttctg 54717628  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 7538171 - 7538118
Alignment:
Q  183 tcctcctccttctccaatcgttgtccttgtttctttcttctcaaatcgatttcg 236  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  7538171 tcctccttcttctccaatcgttctccttgtttgtttcttctcaaatcgatttcg 7538118  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 21003788 - 21003830
Alignment:
Q  192 ttctccaatcgttgtccttgtttctttcttctcaaatcgattt 234  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  21003788 ttctccaatcgttctccttgtttgtttcttctcaaatcgattt 21003830  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 28932546 - 28932485
Alignment:
Q  183 tcctcctccttctccaatcgttgtccttgtttctttcttctcaaatcgatttcgatttcgttctg 247  Q
    ||||||| |||||| |||||||||||||   ||||||||||||| ||||||||||  ||||||||    
T  28932546 tcctccttcttctcaaatcgttgtcctt---tctttcttctcaattcgatttcgaaatcgttctg 28932485  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 3340473 - 3340534
Alignment:
Q  183 tcctcctccttctccaatcgttgtccttgtttctttcttctcaaatcgatttcgatttcgttctg 247  Q
    ||||||| |||||| |||||||||||||   ||||||||||||| ||||||||||  ||||||||    
T  3340473 tcctccttcttctcaaatcgttgtcctt---tctttcttctcaattcgatttcgaaatcgttctg 3340534  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 43657895 - 43657956
Alignment:
Q  183 tcctcctccttctccaatcgttgtccttgtttctttcttctcaaatcgatttcgatttcgttctg 247  Q
    ||||||| |||||| |||||||||||||   ||||||||||||| ||||||||||  ||||||||    
T  43657895 tcctccttcttctcaaatcgttgtcctt---tctttcttctcaattcgatttcgaaatcgttctg 43657956  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 30086214 - 30086153
Alignment:
Q  183 tcctcctccttctccaatcgttgtccttgtttctttcttctcaaatcgatttcgatttcgttctg 247  Q
    ||||||| |||||| |||||||||||||   ||||||||||||| ||||||||||  ||||||||    
T  30086214 tcctccttcttctcaaatcgttgtcctt---tctttcttctcaattcgatttcgaaatcgttctg 30086153  T

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