View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12872_high_14 (Length: 267)
Name: NF12872_high_14
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 38153423 - 38153192
Alignment:
| Q |
19 |
atctcaaggtatagctactttctcttccttaaatgtagacgacaatctactgttttactttacaaaatcttcttgaaatcatgataaacgccgttgacat |
118 |
Q |
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| T |
38153423 |
atctcaaggtatagctactttctcttccttaaatgtagacgacaatctactgttttaccttacaaaatcatcttgaaatcatgataaaagctgttgacat |
38153324 |
T |
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| Q |
119 |
tcttgtagtgttgcactttctatatgacgcattaaaaggatcataagtaattgttccttccttattttgcagatgtatcacttgagtcatcactatcggg |
218 |
Q |
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| T |
38153323 |
tcttgtagtgttgcactttctatatgatgcattaaaaggatcataagtaattattccttccttattttgcagatgtatcacttgagtcatcactatcggg |
38153224 |
T |
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| Q |
219 |
tcgccagccttggttttggcgtcacttcacca |
250 |
Q |
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| T |
38153223 |
tcgccagccttggttttggcgtcacttcacca |
38153192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 38162293 - 38162206
Alignment:
| Q |
163 |
aagtaattgttccttccttattttgcagatgtatcacttgagtcatcactatcgggtcgccagccttggttttggcgtcacttcacca |
250 |
Q |
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| T |
38162293 |
aagtaatcgttccttccttattttgcagaagtaccacctgaatcatcactacagggtccagagccttggatttggcatcacttcacca |
38162206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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