View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12872_high_17 (Length: 240)
Name: NF12872_high_17
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 43308058 - 43307834
Alignment:
| Q |
17 |
aatacaatgacataaaacatacaaatacctttgtaaagttcccgaaaacatcatgaaagaactttggatgctatctgtttaataacactctttgcggagt |
116 |
Q |
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| T |
43308058 |
aatacaatgacataaaacatacaaatacctttgtaaagttcccgaaaacatcatgaaagaactttggatgctatctg-ttaataacactctttgcggtgt |
43307960 |
T |
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| Q |
117 |
cacctataactatcaggtccgtatatatatttcattcaaatatgtgttttgcatgattttataagacactctcaaataagttcgacat------tgtatt |
210 |
Q |
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| T |
43307959 |
cacctataactatcaggtccg----tatatttcattcaaatatgtgttttgcatgattttataagacactctcaaataagttcgacattgtatatgtatt |
43307864 |
T |
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| Q |
211 |
gtatgaaagacgctactttgatatcttcat |
240 |
Q |
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| T |
43307863 |
gtatgaaagacgctactttgatatcttcat |
43307834 |
T |
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