View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12872_high_2 (Length: 579)
Name: NF12872_high_2
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 7 - 563
Target Start/End: Original strand, 47197791 - 47198347
Alignment:
| Q |
7 |
agaagcaaaggtggatatgggtggagattatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactccca |
106 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47197791 |
agaatcaaaggtggatatgggtggagagtatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactccca |
47197890 |
T |
|
| Q |
107 |
acagtctcattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47197891 |
acagtctcattgaaaggggtttcgaggagaaagggaaagccgttcttacaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcag |
47197990 |
T |
|
| Q |
207 |
agctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattgatcattgccatctgtatgcaggtcact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47197991 |
agctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattgatcattgccatctgtatgcaggtcact |
47198090 |
T |
|
| Q |
307 |
actcaataattataatagcattaattattaataatgaatcattttaatgcataatgcagccgaatcaatgttaaaatattaaaccaaatacatgaatttt |
406 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47198091 |
actcaataactataatagcattaattattaatcatgaatcattttaatgcataatgcagtcgaatcaatgttaaaatattaaaccaaatacataaatttt |
47198190 |
T |
|
| Q |
407 |
tattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47198191 |
tattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaat |
47198290 |
T |
|
| Q |
507 |
gatgcttcactttactcatcagtgatcacaggaggtgtgaatgtcctctgcacttta |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47198291 |
gatgcttcactttactcatcagtgatcacaggaggtgtgaatgtcctatgcacttta |
47198347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 47184916 - 47185211
Alignment:
| Q |
14 |
aaggtggatatgggtggagattatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactcccaacagtct |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47184916 |
aaggtggatatgggtggagaatatcattggccggagcaatcattccagcagttatgcttacagtggggtctctcatagtggatgatactcccaacagtct |
47185015 |
T |
|
| Q |
114 |
cattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcagagctagt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47185016 |
cattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcagagctagt |
47185115 |
T |
|
| Q |
214 |
aaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattgatcattgccatctgtatgcaggtcactact |
309 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| |
|
|
| T |
47185116 |
aaagtggctaatgaggtcaagagccccttcaaggatcttgttaagtcccacaatctccctcctttgataattgccatatgtatgcaggtaactact |
47185211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 427 - 559
Target Start/End: Original strand, 47185672 - 47185804
Alignment:
| Q |
427 |
aggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactcatc |
526 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47185672 |
aggtcttccaacaattcaccggcatcaatgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactcatc |
47185771 |
T |
|
| Q |
527 |
agtgatcacaggaggtgtgaatgtcctctgcac |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
47185772 |
agtgatcacaggaggtgtgaatgtcctctgcac |
47185804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 523
Target Start/End: Original strand, 47212308 - 47212396
Alignment:
| Q |
435 |
cagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactc |
523 |
Q |
| |
|
||||||| ||| ||||||||||| || ||||||||||||||||| |||||| ||| | |||||| | ||||||||| |||||||||| |
|
|
| T |
47212308 |
cagcaattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggatttaagaatgatgctgcactttactc |
47212396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University