View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12872_high_3 (Length: 552)
Name: NF12872_high_3
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 14 - 537
Target Start/End: Original strand, 51615453 - 51615978
Alignment:
| Q |
14 |
gatgaacatcattgattgtgtttgtttgtgagttagnnnnnnn-gtggttgggtcgcagtgaagatggtgttttcttggtatatagtataattattctgt |
112 |
Q |
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| T |
51615453 |
gatgaacatcattgattgtgtttgtttgtgagttagttttttttgtggttgggtcgcagtgaagatggtgttttcttggtatatagtataattattctgt |
51615552 |
T |
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| Q |
113 |
gttatgttttcatgtgtgtgaaaagtagaacattttagggtttaggnnnnnnn-gttcctttgattttgaatggagaagtccattgatcaaaggaattca |
211 |
Q |
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| T |
51615553 |
gttatgttttcatgtgtgtgaaaagtagaacattttagggtttaggttttttttgttcctttgattttgaatggagaagtccattgatcaaaggaattca |
51615652 |
T |
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| Q |
212 |
attagggattttacttccttctgggttggaagattgattcattaggcttcttattattttagatgttcaaatttgttttaattagattatggggttttgc |
311 |
Q |
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| T |
51615653 |
attagggattttacttccttctgggttggaagattgattcattaggcttcttattattttagatgttcaaatttgttttaattagattatggggttttgc |
51615752 |
T |
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| Q |
312 |
agaaggagagaaaaaagtatgatatttatttatgtgatagtgctgataaattggattgaggctggaataggttttcagaaccttgatcattatgtaacaa |
411 |
Q |
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| T |
51615753 |
agaaggagagaaaaaagtatgatatttatttatgtgatagtcctgataaattggattgaggctggaataggttttcagaaccttgatcattatgtaacaa |
51615852 |
T |
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| Q |
412 |
gtgcagtggaaattcgttttgattgttgttgagttgaaagctctccaagtttggatggtgatggaatgatgaattaattgcttctgtttcactttcttag |
511 |
Q |
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| T |
51615853 |
gtgcagtggaaattcgttttgattgttgttgagttgaaagctctccaagtttggatggtgatggaatgatgaattaattgcttctgtttcactttcttag |
51615952 |
T |
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| Q |
512 |
tggggttttgagttgtactgataagt |
537 |
Q |
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| T |
51615953 |
tggggttttgagttgtactgataagt |
51615978 |
T |
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