View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12872_high_4 (Length: 539)
Name: NF12872_high_4
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 48 - 394
Target Start/End: Original strand, 42037599 - 42037940
Alignment:
| Q |
48 |
caaggaatctgcatcataaaccaacatcattgcaaagagaaacacctcaaaaagagtaaattaagaaagagnnnnnnnnnntattcactcacgggtttta |
147 |
Q |
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| T |
42037599 |
caaggaatctgcatcataaaccaacatcattgcaaagagaaacacctcaaaaagagtaaattaagaaagaaagaaaa-----aatcactcacgggtttta |
42037693 |
T |
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| Q |
148 |
agagttttgttaactcttgtacttttctcttccaattttcaataatatttctttgtttgccattnnnnnnnntacacatcagtattgataatataataag |
247 |
Q |
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| T |
42037694 |
agagttttgttaactcttgtacttttctcctccaattttcaataatatttctttgtttgccattaaaaaaaatacacatcagtattgataatataataag |
42037793 |
T |
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| Q |
248 |
cataagtatttacaatttcttaaggtgcatcatgttcatactttactannnnnnnatggcaaagataaatatattaacaaaataaagaggttgtgcaaga |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42037794 |
cataagtatttacaatttcttaaggtgcatcatgttcatactttactatttttttatggcaaagataaatatattaacaaaataaagaggttgtgcaaga |
42037893 |
T |
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| Q |
348 |
gtgctacaaaacaaacagaaaatagcagcctgagccccaggggtacc |
394 |
Q |
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| T |
42037894 |
gtgctacaaaacaaacagaaagtagcagcctgagccccaggggtacc |
42037940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 463 - 523
Target Start/End: Original strand, 42038009 - 42038069
Alignment:
| Q |
463 |
tcccaaaaacctgagaataacctccaaaaccagactactcgtcggaagttgcccattccct |
523 |
Q |
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| T |
42038009 |
tcccaaaaacctgagaataacctacaaaaccagactacccgtcggaagttgcccattccct |
42038069 |
T |
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