View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12872_high_7 (Length: 503)
Name: NF12872_high_7
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 490
Target Start/End: Original strand, 36715412 - 36715885
Alignment:
| Q |
19 |
atttacgatgacattataattaaacgataaaagtatgctttttatgtgaatgtcttgttcttgtaggagaaacttcctcgttattgcgctaatcgttgta |
118 |
Q |
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| T |
36715412 |
atttacgatgacattataattaaacgataaaagtatgctttttatgtggatgtcttgttcttgtaggagaaacttcctcgttattgcgctaatcgttgta |
36715511 |
T |
|
| Q |
119 |
tgattggatatcctttgaatcaatgcaaaaaacgtcaaaagaaagattgtttgaatgagaatgacgatgttcgtgtaaagagctttgacgatcttcagaa |
218 |
Q |
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| T |
36715512 |
tgattggacatcctttgaatcaatgcaaaaaacatcaaaagaaagattgtttgaatgagaatgacgatgttcgtgttaagagctctgatgatcttcagaa |
36715611 |
T |
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| Q |
219 |
aaatggtaataaaaatattcgatatgataactttgctgacgaaggcgtc-tactcgtttgatccagatgcctgagagtgtac-aaatcaacatcttgaaa |
316 |
Q |
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| T |
36715612 |
aaatgataataaaaatattcgatatgataactttgctgacgaaggcgtcttactcgtttgatccagatgcctgagagtgtacaaaatcaacatcttgaaa |
36715711 |
T |
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| Q |
317 |
ttattcacgaagagccacaagattttcaaaatgatagcataatgtcatggtcattgcaggttcctcttttttcatatggccagtcatgataataccaaat |
416 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36715712 |
ttattcgggaagagccacaagattttcaaaatgatagcataatgtcatggtcattgcaggttcctcttttttcatatggccagtcataataataccaaat |
36715811 |
T |
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| Q |
417 |
aaattgttcacatagaacatcttgaaattatttatggaataacatcagttattgcactctcaccaaagttttct |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36715812 |
aaattgttcacatagaacatcttgaaattatttatggaataacatcagttattgcactctcaccaaagttttct |
36715885 |
T |
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