View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12872_high_8 (Length: 402)
Name: NF12872_high_8
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 11733525 - 11733138
Alignment:
| Q |
1 |
tgatacggttgtagaaccgtataatgccacgctttctgttcatcagcttgttgagaatgcggatgaatgcatggtgttggataacgaggctctttatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11733525 |
tgatacggttgtagaaccgtataatgccacgctttctgttcatcagcttgttgagaatgcggatgaatgcatggtgttggataacgaggctctttatgat |
11733426 |
T |
|
| Q |
101 |
atttgcttcaggactttgaagcttgctacaccaacatgtaagtttgtaatttttgttttaattttgatgtgattaattaatcagattattttaagttata |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11733425 |
atttgtttcaggactttgaagcttgctacaccaacatgtaagtttataatttttgttttaattttgatgtgattaattaatcagattattttaagttata |
11733326 |
T |
|
| Q |
201 |
tgatgttgtctgagttagaatgtaaattcaatgttttagagattagagtaagacgattaacccaaatgttatacagattagattgttatgatagttgata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11733325 |
tgatgttgtctgagttagaatgtaaattcaatgttttagagattagagtaagacgattaacccaaatgttatacagattagattgttatgatagttgata |
11733226 |
T |
|
| Q |
301 |
gacacaaagctgggtaggattaagaatggatgcacaagagaaaaagttgagatatcatctgttatattttatgtaaatatggtacacc |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11733225 |
gacacaaagctgggtaggattaagaatggatgcacaagagaaaaagttgagatatcatctgttatattttatgtaaatatggtacacc |
11733138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 38178420 - 38178277
Alignment:
| Q |
2 |
gatacggttgtagaaccgtataatgccacgctttctgttcatcagcttgttgagaatgcggatgaatgcatggtgttggataacgaggctctttatgata |
101 |
Q |
| |
|
||||| ||||| || || || ||||| || |||||||| |||||||||||||| ||||| |||||||||||||| ||||| || ||||| || ||||||| |
|
|
| T |
38178420 |
gatacagttgtggagccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgcagatgaatgcatggttttggacaatgaggcactctatgata |
38178321 |
T |
|
| Q |
102 |
tttgcttcaggactttgaagcttgctacaccaacatgtaagttt |
145 |
Q |
| |
|
|||||||| | || ||||||||||| |||||||| |||| |||| |
|
|
| T |
38178320 |
tttgcttccgtacattgaagcttgccacaccaacttgtaggttt |
38178277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 45453239 - 45453138
Alignment:
| Q |
8 |
gttgtagaaccgtataatgccacgctttctgttcatcagcttgttgagaatgcggatgaatgcatggtgttggataacgaggctctttatgatatttgct |
107 |
Q |
| |
|
||||| ||||| || ||||| || || ||||| || || |||||||||||||| |||||||||||||| ||||||| || ||||| ||||||||||||| |
|
|
| T |
45453239 |
gttgttgaaccttacaatgctacactctctgtccaccaacttgttgagaatgctgatgaatgcatggttctggataatgaagctctctatgatatttgct |
45453140 |
T |
|
| Q |
108 |
tc |
109 |
Q |
| |
|
|| |
|
|
| T |
45453139 |
tc |
45453138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 34840193 - 34840303
Alignment:
| Q |
1 |
tgatacggttgtagaaccgtataatgccacgctttctgttcatcagcttgttgagaatgcggatgaatgcatggtgttggataacgaggctctttatgat |
100 |
Q |
| |
|
|||||| ||||| || || |||||||| || ||||||||||||||| | ||||||||||| || || || |||||| | ||||| |||||| | || ||| |
|
|
| T |
34840193 |
tgatactgttgttgagccttataatgctactctttctgttcatcagttggttgagaatgctgacgagtgtatggtgcttgataatgaggctttgtacgat |
34840292 |
T |
|
| Q |
101 |
atttgcttcag |
111 |
Q |
| |
|
|| |||||||| |
|
|
| T |
34840293 |
atctgcttcag |
34840303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University