View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12872_low_1 (Length: 631)
Name: NF12872_low_1
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 5 - 332
Target Start/End: Complemental strand, 4769956 - 4769629
Alignment:
| Q |
5 |
aataactacacctaattctccgtcatcaccactgtcaccatcgccggcgagattcctccgatatggatctatacaatatcggttggattttaagctctgt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4769956 |
aataactacacctaattctccgtcatcaccactgtcaccatcgccggcgagattcctccgatatggatctatacaatatcggttggattttaagctctgt |
4769857 |
T |
|
| Q |
105 |
tttgagtctatttgcgttatacaatttgattttcaccgggaagaagaattatgatgtgaatgagaaggtaaatcagcgtgaggatagcgtgacgagtact |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4769856 |
tttgagtctatttgcgttatacaatttgattttcgccgggaagaagaattatgatgtgaatgagaaggtaaatcagcgtgaggatagcgtgacgagtact |
4769757 |
T |
|
| Q |
205 |
gatgccggtgaaattaaatcggagaaacttaacggtgatgctgatgtcatcattgttggagctggtattgctggtgctgctttggctcatacacttggga |
304 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4769756 |
gatgccggtgaaattaaatcggacaaacttaacggtgatgctgatgttatcattgttggagctggtattgctggtgctgctttggctcatacacttggga |
4769657 |
T |
|
| Q |
305 |
aggtattggatcgagatttaatcgatta |
332 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
4769656 |
aggtattgtatcgagatttaatcgatta |
4769629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 516 - 616
Target Start/End: Complemental strand, 4769443 - 4769343
Alignment:
| Q |
516 |
aaatctatttgagaggaatagctcgatgaaagagttgtttgaccaatgaaaagctattaatcactgacaggacacttcgacttgtaataatttgagaaaa |
615 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4769443 |
aaatctatttgagaggaatagcttgatgaaagagttgtttgaccaatgaaaagctatgaatcactgacacgacacttcgacttgtaataatttgagaaaa |
4769344 |
T |
|
| Q |
616 |
t |
616 |
Q |
| |
|
| |
|
|
| T |
4769343 |
t |
4769343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 416 - 478
Target Start/End: Complemental strand, 4769543 - 4769481
Alignment:
| Q |
416 |
cgtgaaaagttagttgtggtgaatagagaaagttgatatagcaaaaaggcaaataattcgata |
478 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4769543 |
cgtgaaaagttagttgtggtgaataaagaaagttgatatagcaaaaaggcaaataattcgata |
4769481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University