View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12872_low_11 (Length: 320)
Name: NF12872_low_11
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 41850000 - 41849718
Alignment:
| Q |
20 |
gctctggtctcgctctctttcatttctttctcttcattttataccattgcttacttcatgtaaaataaccaagacattcaaatttgtttgttctgttgta |
119 |
Q |
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| T |
41850000 |
gctctggtcttactctatttcatttctttctcttcattttataccattgcttacttcatgtaaaataaccaagacattcaaatttgtttgttctgttgta |
41849901 |
T |
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| Q |
120 |
gttgtaggagaagctgagttagatggaactgagaataagccaaggttacttagtctcaacaaaatcaagggtgttgcctgtggtattcttgcagcttatg |
219 |
Q |
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| T |
41849900 |
gttgtaggagaagctgagttagatggaactgagaataagccaaggttacttagtctcaacaaaatcaagggtgttgcctgtggtattcttgcagcttatg |
41849801 |
T |
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| Q |
220 |
ctgttacttctgcttcatttcccgttactgctgctactcaggttcaaacttcaaattcacctgaaaatattaacactcgctca |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
41849800 |
ctgttacttctgcttcatttcccgttactgctgctactcaggttcaaacctcaaattcacctgaaaatattaacacccgctca |
41849718 |
T |
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