View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12872_low_20 (Length: 229)
Name: NF12872_low_20
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 50 - 219
Target Start/End: Complemental strand, 28761751 - 28761582
Alignment:
| Q |
50 |
taagtatggtttgagcatcagttttaaaaagctcaattaggatagcttcatggaataaccaataagcaatcaatgattttatttcatcatctgctcaaat |
149 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28761751 |
taagtatgatttgagcatcagttttaaaaagctcaattaggatagcttcatggaataaccaataagcaatcaataattttatttcatcatctgctcaaat |
28761652 |
T |
|
| Q |
150 |
aatcatagtttaaagctaccacaaacaatacaatgggtcattcacccttttcttatatagactacctatg |
219 |
Q |
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| T |
28761651 |
aatcatagtttaaagctaccagaaacaatactatgggtcattcacccttttcttatatggactacctatg |
28761582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 28761109 - 28760945
Alignment:
| Q |
50 |
taagtatggtttgagcatcagttttaaaaagctcaattaggatagcttcatggaataaccaataagcaatcaatgattttatttcatcatctgctcaaat |
149 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28761109 |
taagtatgatttgagcatcagttttaaaaagctcgattaggatagcttcatggaataaccaataagcaatcaatgattttatttcatcatctactcaaat |
28761010 |
T |
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| Q |
150 |
aatcatagtttaaagctaccacaaacaatacaatgggtcattcaccc-ttttcttatatagacta |
213 |
Q |
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| T |
28761009 |
aatcatagtttcaagctaccagaaacaatacaatgggtcattcaccctttttcttatatggacta |
28760945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 28762287 - 28762151
Alignment:
| Q |
18 |
catgggtcattcacccttttttaaatattaactaagtatggtttgagcatcagttttaaaaagctcaattaggatagcttcatggaataaccaataagca |
117 |
Q |
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| T |
28762287 |
catgagtcattcacccttttttaaatattaactaagtatggtttgagcatgagttttaaaaagctcgattaggatagtttcatgaaataatcaataagca |
28762188 |
T |
|
| Q |
118 |
atcaatgattttatttcatcatctgctcaaataatca |
154 |
Q |
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| T |
28762187 |
attaatggttttatttcatcatctgctcaaataatca |
28762151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 28760977 - 28760844
Alignment:
| Q |
19 |
atgggtcattcacccttttttaaatattaactaagtatggtttgagcatcagttttaaaaagctcaattaggatagcttcatggaataaccaataagcaa |
118 |
Q |
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|
|||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
28760977 |
atgggtcattcaccctttttcttatatggactatgtatggtttgagcatcagttttaaaaagctcgattagcatagcttcatggaataaccaataagcaa |
28760878 |
T |
|
| Q |
119 |
tcaatgattttatttcatcatctgctcaaataat |
152 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
28760877 |
ctaatggttttatttcatcatctgctcaaataat |
28760844 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 28762426 - 28762268
Alignment:
| Q |
50 |
taagtatggtttgagcatcagttttaaaaagctcaattaggatagcttcatggaataaccaataagcaatcaatgattttatttcatcatctgctcaaat |
149 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
28762426 |
taagtatgatttgagcatcaactttaaaaagctcgattagaatagcttcatggaataaccaataagcaattatcgattttatttcatcatctgctcaaat |
28762327 |
T |
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| Q |
150 |
aatcat--------agtttaaagctaccacaaacaatacaatgggtcattcaccctttt |
200 |
Q |
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|||||| ||||| ||||||||| ||| ||||| ||| ||||||||||||||| |
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| T |
28762326 |
aatcatactgtcacagtttcaagctaccaaaaagaataccatgagtcattcaccctttt |
28762268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 28761619 - 28761485
Alignment:
| Q |
19 |
atgggtcattcacccttttttaaatattaactaagtatggtttgagcatcagttttaaaaagctcaattaggatagcttcatggaataaccaataagcaa |
118 |
Q |
| |
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||||||||||||||||||| | | ||| |||| |||||||||||||| |||||||||| |||| ||||| |||| |||||||| ||| |||| | ||| |
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| T |
28761619 |
atgggtcattcacccttttctta-tatggactacctatggtttgagcattagttttaaaatgctcgattagtatagtttcatggactaatcaattatcaa |
28761521 |
T |
|
| Q |
119 |
tcaatgattttatttcatcatctgctcaaataatca |
154 |
Q |
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| ||| |||||||||||||||| |||||||||||| |
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| T |
28761520 |
ttgatggttttatttcatcatctactcaaataatca |
28761485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 28765079 - 28765009
Alignment:
| Q |
85 |
attaggatagcttcatggaataaccaataagcaatcaatgattttatttcatcatctgctcaaataatcat |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| ||||| |
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| T |
28765079 |
attaggatagcttcatggaataaccaataagcaattaacaattttatttcatcgtctgctcaaatgatcat |
28765009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 51012460 - 51012520
Alignment:
| Q |
52 |
agtatggtttgagcatcagttttaaaaagctcaattaggatagcttcatggaataaccaat |
112 |
Q |
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|
|||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||||| |
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|
| T |
51012460 |
agtatgatttgagcatcagttttaaaaagctcgattaaaattgcttcatggaataaccaat |
51012520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 46896226 - 46896291
Alignment:
| Q |
84 |
aattaggatagcttcatggaataaccaataagcaatcaatgattttatttcatcatctgctcaaat |
149 |
Q |
| |
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|||||||||| ||||||| ||||||||||||| || | || ||||||||||||||||| |||||| |
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| T |
46896226 |
aattaggataacttcatgaaataaccaataagtcattagtgtttttatttcatcatctgttcaaat |
46896291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 38314116 - 38314025
Alignment:
| Q |
65 |
catcagttttaaaaagctcaattaggatagcttcatggaataaccaataagcaatcaatgattttatttcatcatctgctcaaataatcata |
156 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||| ||||||||||||| |||| |||| ||||| |||||||||||| |||||||||||| |
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|
| T |
38314116 |
catcagttttaaaaaactcgatcaggatagcttcatagaataaccaataaacaattaatggttttagttcatcatctgcacaaataatcata |
38314025 |
T |
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