View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12872_low_4 (Length: 541)
Name: NF12872_low_4
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Original strand, 40184807 - 40185307
Alignment:
| Q |
19 |
cagctgacacgttgcacaccgggatcctcgtgggttgacacgtagattaaatattcaccgtcgctggataaacttggtttatctttgattgaaagttgag |
118 |
Q |
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| T |
40184807 |
cagctgacacgttgcacaccgggatcctcgtgggttgacacgtagattaaatattgaccgtcgctggataaacttggtttatctttgattgaaagttgag |
40184906 |
T |
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| Q |
119 |
actgtgtttctgtgaggtgattaggtaacagtggaagttgaatcctatcattgattttggtggtggttgtgtaaacagcgtcgtagtatatggttggaaa |
218 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40184907 |
actgtgtttgagtgaggtgattaggtaacagtggaagttgaatcctatcattgattttggtggtggttgtgtaaacggcgtcgtagtatatggttggaaa |
40185006 |
T |
|
| Q |
219 |
accggttctctcagtaacgtaaacgagttgcagaggaggtggatcttggtgagtgaggagtttaatggatgtgagattgggaaggaattggccgttaaaa |
318 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40185007 |
accggttctctcagtaacgtaaacgagttgaagaggaggtggatcttggtgagtgaggagtttaatggatgtgagattgggaaggaattggccgttaaaa |
40185106 |
T |
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| Q |
319 |
ttgacggagtgtccgtcagtgagttgtaattcttcttggtggtggtagtgatgatgaatcgggagggaatagatatcaaaagcgtagtcaggtctgccaa |
418 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40185107 |
ttgacggagtgtccgtcagtgagttgtaa---ttcttggtggtggtagtgatgatgaattgggagggaatagatatcaaaagcgtagtcaggtctgccaa |
40185203 |
T |
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| Q |
419 |
gtgtggtgaagatgatgctatcactgctggaagcatcctcttcaactgcctttagcaagggaaacgccagcagctgtagcagcagcaacactatgcataa |
518 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
40185204 |
gtgtggtgaagatgatgctatcgctgctggaagcatcctcttcaactgcctttagcaagggaaacaccagcaggtgtagcagcagcaacactatgcataa |
40185303 |
T |
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| Q |
519 |
ttga |
522 |
Q |
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|||| |
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| T |
40185304 |
ttga |
40185307 |
T |
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