View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12872_low_6 (Length: 536)
Name: NF12872_low_6
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 6e-66; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 292 - 471
Target Start/End: Complemental strand, 10405626 - 10405448
Alignment:
| Q |
292 |
aattaatattgtataatatttttggttgaggtttagtaattattacatattatcaccgaaagaaaagtaaataattcagcatctatatatagtatgatat |
391 |
Q |
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| T |
10405626 |
aattaatattgtataatatttttggtcgaggtttagtaattattacgtattatcatcgaaagataagtatataattcagca-ctatatatagtatgatat |
10405528 |
T |
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| Q |
392 |
catgatatttgaatgtcagcatggtaattcaaatgctacaattgaatcacacacaattttaaattctctaaaaatattca |
471 |
Q |
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| T |
10405527 |
aatgatatttgaatgccaacatcgtaattcaatttctacaattgaatcacacacaattttaaattctctaaaaatattca |
10405448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 296 - 465
Target Start/End: Complemental strand, 10395011 - 10394844
Alignment:
| Q |
296 |
aatattgtataatatttttggttgaggtttagtaattattacatattatcaccgaaagaaaagtaaataattcagcatctatatatagtatgatatcatg |
395 |
Q |
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| T |
10395011 |
aatattttaaaatatttttggtcgaggtttagtattcattacat--tatcaccgaaagaaaagtaaataattcagcatctatatatagtatgatatcatg |
10394914 |
T |
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| Q |
396 |
atatttgaatgtcagcatggtaattcaaatgctacaattgaatcacacacaattttaaattctctaaaaa |
465 |
Q |
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| T |
10394913 |
atatttgaatgccaacatggtaattcaattgctacaattgaatcacacataattttaaattctctaaaaa |
10394844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 10405829 - 10405675
Alignment:
| Q |
89 |
cacccacatcatgaagtggctagccaaattaggccaattctttctaaacggtatgaagtgtagcactcctttattattcaaggtcaatgatatccctgtt |
188 |
Q |
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| T |
10405829 |
cacccacatcatgaagtggctagccaaaataggccaattctttcaaaacggtatgaagtgtagcactccttcattattcaaggtcaaagttatgcctatt |
10405730 |
T |
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| Q |
189 |
atcataaatgcatattaaatagacggtgactatcatgaatatattcaatcaaata |
243 |
Q |
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| T |
10405729 |
atcataaatgtatattaaatggacgatgattgtcatgaatatattcaatcaaata |
10405675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 10395172 - 10395064
Alignment:
| Q |
135 |
aacggtatgaagtgtagcactcctttattattcaaggtcaatgatatccctgttatcataaatgcatattaaatagacggtgactatcatgaatatattc |
234 |
Q |
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| T |
10395172 |
aacggtatgaaatgtagcactccttcattattcagggtcaatgttatgcctattatcataaatgcatttcatatggacgttgattgtcatgaatatactc |
10395073 |
T |
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| Q |
235 |
aatcaaata |
243 |
Q |
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| T |
10395072 |
aatcaaata |
10395064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 462 - 520
Target Start/End: Complemental strand, 10403624 - 10403566
Alignment:
| Q |
462 |
aaaatattcatcaatgctaaagcaaaatattaccgggattaaaaagtgagaattttgtg |
520 |
Q |
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| T |
10403624 |
aaaattttcatcaatgctaaagcaaaatattacaaggattaaaaagtgtgatttttgtg |
10403566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 291 - 469
Target Start/End: Original strand, 26419198 - 26419381
Alignment:
| Q |
291 |
gaattaatattgtataatatttttggttgag-gtttagtaattattacatattatcaccg--aaagaaaagtaaataattcagcatctatatatagtatg |
387 |
Q |
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||||||||||||||||||||||||||| | | || ||||| ||||||||||||||||| ||| ||||| ||||||| | ||| ||| ||| ||| |
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| T |
26419198 |
gaattaatattgtataatatttttggtctattgatttgtaatcattacatattatcaccggaaaaaaaaaggtaataatttcgtatcgttatgtaggatg |
26419297 |
T |
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| Q |
388 |
atatcatgatatttgaatgtcagca--tggtaattcaaatgctacaattgaatcacacacaattttaaattctctaaaaatatt |
469 |
Q |
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| T |
26419298 |
atatcataatatttgaatgtcaacacatagtaattcaattgctacaattgaattacacgtaattttaaattctctaaaaatatt |
26419381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 26419500 - 26419412
Alignment:
| Q |
385 |
atgatatcatgatatttgaatgtcagca--tggtaattcaaatgctacaattgaatcacacacaattttaaattctctaaaaatattca |
471 |
Q |
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| T |
26419500 |
atgatatcataatatttgaatgtcaacacatggtaattcaattgttataattgtattacacgcaattttaaattctctaaaaatattca |
26419412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 26419737 - 26419662
Alignment:
| Q |
156 |
cctttattattcaaggtcaatgatatccctgttatcataaatgcatattaaatagacggtgactatcatgaatata |
231 |
Q |
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| T |
26419737 |
ccttcattattcaaggtcaattctatgcctattatcataaatgcatattaaataaacgttgattgtcataaatata |
26419662 |
T |
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