View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12872_low_7 (Length: 514)
Name: NF12872_low_7
Description: NF12872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12872_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Original strand, 38180375 - 38180861
Alignment:
| Q |
18 |
ctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcag |
117 |
Q |
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| T |
38180375 |
ctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcag |
38180474 |
T |
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| Q |
118 |
cggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180475 |
cggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccg |
38180574 |
T |
|
| Q |
218 |
ggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagc |
317 |
Q |
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| T |
38180575 |
agatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgtttggcgaattggagagc |
38180674 |
T |
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| Q |
318 |
agggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcacgaaccagt |
417 |
Q |
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| T |
38180675 |
agggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcacgaaccagt |
38180774 |
T |
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| Q |
418 |
agagtaaaggaagtgtgatatgcaacggttatgcatgtatatggatggatagcataagccaagtgtttttatacaagtgatgtccat |
504 |
Q |
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| T |
38180775 |
agagtaaaggaagtgtgatatgcaacggttatgaatgtatatggatggatagcataagctaagtgtttttatacaagtggtgtccat |
38180861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 38185044 - 38185435
Alignment:
| Q |
18 |
ctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
38185044 |
ctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgttagaaattctgagcag |
38185143 |
T |
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| Q |
118 |
cggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccg |
217 |
Q |
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| T |
38185144 |
tggcacttaagctcggacctgtaggcgatgaagtcttcgttgctttcgaaatttttaccgtcgtcgtagccatcagagaaggtggcgaaggagaggcctg |
38185243 |
T |
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| Q |
218 |
ggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagc |
317 |
Q |
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| T |
38185244 |
ggatggttggtttgttgataaggccagtgtgtaagtagatagttgtagcaaaagtgacttgtgcgccgaaagaaatgagacgcttggcgaattggagtgc |
38185343 |
T |
|
| Q |
318 |
agggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcac |
409 |
Q |
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| T |
38185344 |
agggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtaatggtggcttgtgaaaatgcaatagcac |
38185435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 51 - 404
Target Start/End: Original strand, 38170594 - 38170947
Alignment:
| Q |
51 |
taagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaag |
150 |
Q |
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| T |
38170594 |
taagcaagtgaatggatgattttcttgtttggaggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactcagacatgtaggagacgatg |
38170693 |
T |
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| Q |
151 |
tcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgta |
250 |
Q |
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| T |
38170694 |
tcttcgtcgccaaaggatttttgaccgtcgtcatagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtata |
38170793 |
T |
|
| Q |
251 |
agtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgat |
350 |
Q |
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| T |
38170794 |
agtggatagtggtagcaaaagtgacttttgcgcccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgttat |
38170893 |
T |
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| Q |
351 |
gatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaat |
404 |
Q |
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| T |
38170894 |
gatgaggaagtggtggttttgcgccatggtagtggtggattgtgaaaatgcaat |
38170947 |
T |
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