View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12873_high_11 (Length: 384)

Name: NF12873_high_11
Description: NF12873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12873_high_11
NF12873_high_11
[»] chr4 (16 HSPs)
chr4 (141-344)||(35241357-35241560)
chr4 (142-344)||(35278148-35278351)
chr4 (99-341)||(35283625-35283846)
chr4 (148-342)||(35287195-35287391)
chr4 (183-339)||(35253630-35253786)
chr4 (24-96)||(35283512-35283584)
chr4 (144-337)||(35271467-35271666)
chr4 (24-92)||(35278001-35278069)
chr4 (30-96)||(35241220-35241286)
chr4 (258-335)||(35238385-35238462)
chr4 (142-199)||(35275487-35275544)
chr4 (256-336)||(35247083-35247163)
chr4 (47-96)||(35253480-35253529)
chr4 (30-91)||(35271325-35271386)
chr4 (26-68)||(35275349-35275391)
chr4 (284-337)||(35275605-35275658)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 141 - 344
Target Start/End: Original strand, 35241357 - 35241560
Alignment:
Q  141 tatatatatcatgaaacatcaaaacataacgaaccaatcatcaagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaag 240  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35241357 tatatatatcatgaaacatcaaaacataatgaatcaatcctcaagttacaatggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaag 35241456  T
Q  241 agactcacnnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtag 340  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35241457 agactcactttttttgcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacttctaagatggtag 35241556  T
Q  341 atga 344  Q
    ||||    
T  35241557 atga 35241560  T

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Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 142 - 344
Target Start/End: Original strand, 35278148 - 35278351
Alignment:
Q  142 atatatatcatgaaacatcaaaacataacgaaccaatcatcaagttacaaa-ggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaag 240  Q
    |||| |||||||||||||||||||| ||||||  ||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  35278148 atatgtatcatgaaacatcaaaacacaacgaattaatcatcaagttacaaaaggaaggactaatgcagcagagtgagtagaatggggtatgaaaagaaag 35278247  T
Q  241 agactcacnnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtag 340  Q
    ||||||||       |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35278248 agactcaccgttttagcatcccagaattttattgttttatcagcagaagatgttgcaaatatagtggatcctggttgaaatctaacatctaagatggtag 35278347  T
Q  341 atga 344  Q
    ||||    
T  35278348 atga 35278351  T

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Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 99 - 341
Target Start/End: Original strand, 35283625 - 35283846
Alignment:
Q  99 ccaacaacattgcacaacactctctcgagcaatacatatacatatatatatcatgaaacatcaaaacataacgaaccaatcatcaagttacaaaggaagg 198  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35283625 ccaacaacattgcacaacactctctcgagcaatacatat--------atatcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaagg 35283716  T
Q  199 actaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaa 298  Q
    ||||||||||||||||||||||             |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  35283717 actaatgcagaagagtgagtag-------------aagaaagagactcactttttttgcatcccataattttactgttttatcagcagaagatgttgcaa 35283803  T
Q  299 atatagtcgatcctggttgaaatctaacatctaagatggtaga 341  Q
    ||||||| ||||||||||||||||| || || |||||||||||    
T  35283804 atatagttgatcctggttgaaatctcacgtcaaagatggtaga 35283846  T

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Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 148 - 342
Target Start/End: Original strand, 35287195 - 35287391
Alignment:
Q  148 atcatgaaacatcaaaacataacgaaccaatcatcaagttacaaaggaaggactaatgcagaagagtgagtagaagggg-atatgaaaa-gaaagagact 245  Q
    ||||||||||| ||| |||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||    
T  35287195 atcatgaaacagcaagacataaggcatcaatcctcaagttacaaaggaaggactaatgcagaagagtgagtagaagggggatgtgaaaaagaaagagact 35287294  T
Q  246 cacnnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagat 342  Q
    |||       |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||| ||||| ||||||    
T  35287295 cactttttttgcatcccataattttactgttttatcagcagaggatgttgcaaatatagttgaacctggtttaaatctaacatcgaagatagtagat 35287391  T

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Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 183 - 339
Target Start/End: Original strand, 35253630 - 35253786
Alignment:
Q  183 aagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgttttatca 282  Q
    |||||||| |||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||       |||||||||||||||||||||||||||    
T  35253630 aagttacataggaaggaataatgcagatgagtgagtagaaggagatgtgaaaagaaagagactcacactgtttgcatcccataattttactgttttatca 35253729  T
Q  283 gcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggta 339  Q
    |||||||| |||||||| | ||| |||||||||||||||||||| || |||||||||    
T  35253730 gcagaagaggttgcaaacacagttgatcctggttgaaatctaacttcgaagatggta 35253786  T

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Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 35283512 - 35283584
Alignment:
Q  24 tcatcatgacacgctgattgaggtcccatactttaattacatcacaggtatcagacgagcaaataattcctcc 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  35283512 tcatcatgacacgctgattgaggtcccatactttaattacatcacaggtatcggacgagcaaagaattcctcc 35283584  T

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Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 337
Target Start/End: Original strand, 35271467 - 35271666
Alignment:
Q  144 atatatcatgaaacatcaaaacataacgaaccaatcatcaagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagaga 243  Q
    |||||||||||||||||||||||||| |||  ||||    ||||||||||||| ||||| ||||||||||||||||||||| | || ||||||||||| |    
T  35271467 atatatcatgaaacatcaaaacataatgaattaatccatgagttacaaaggaaagactattgcagaagagtgagtagaaggagctaagaaaagaaagaaa 35271566  T
Q  244 ctcac------nnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatgg 337  Q
    || ||             || | ||||| |||||||||| ||||||||||||| |||||||||||||  ||||||| | ||||||| || ||||||||||    
T  35271567 cttactcttgttctttttgcgtgccatagttttactgttctatcagcagaagaagttgcaaatataggtgatcctgatcgaaatctgacttctaagatgg 35271666  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 35278001 - 35278069
Alignment:
Q  24 tcatcatgacacgctgattgaggtcccatactttaattacatcacaggtatcagacgagcaaataattc 92  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||    
T  35278001 tcattatgacacgctgattgagatcccatactttaattaaatcacaggtatcagacgagcaaagaattc 35278069  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 35241220 - 35241286
Alignment:
Q  30 tgacacgctgattgaggtcccatactttaattacatcacaggtatcagacgagcaaataattcctcc 96  Q
    |||||||||||||||| ||||||||||||||||||| || |||||| |||||||||| | |||||||    
T  35241220 tgacacgctgattgagatcccatactttaattacattactggtatcggacgagcaaagagttcctcc 35241286  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 335
Target Start/End: Original strand, 35238385 - 35238462
Alignment:
Q  258 atcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagat 335  Q
    ||||||||||||||||| ||||||||  ||||| |||||||||||| | | |||||||||||||||||| ||| ||||    
T  35238385 atcccataattttactgctttatcagaggaagaagttgcaaatatatttgttcctggttgaaatctaacttctgagat 35238462  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 35275487 - 35275544
Alignment:
Q  142 atatatatcatgaaacatcaaaacataacgaaccaatcatcaagttacaaaggaagga 199  Q
    |||||||| ||||||||||||||||||| |||  |||| |||||||||||||||||||    
T  35275487 atatatatgatgaaacatcaaaacataatgaattaatcctcaagttacaaaggaagga 35275544  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 35247083 - 35247163
Alignment:
Q  256 gcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatg 336  Q
    |||||||||| ||||||||||  ||||  ||||| |||||||||| |||| |||  ||||||||||||||| |||||||||    
T  35247083 gcatcccatagttttactgttccatcacgagaagttgttgcaaatctagttgattttggttgaaatctaacttctaagatg 35247163  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 35253480 - 35253529
Alignment:
Q  47 tcccatactttaattacatcacaggtatcagacgagcaaataattcctcc 96  Q
    ||||||||||||||||||||||||||||| |||| ||||| || ||||||    
T  35253480 tcccatactttaattacatcacaggtatcggacgtgcaaagaactcctcc 35253529  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 35271325 - 35271386
Alignment:
Q  30 tgacacgctgattgaggtcccatactttaattacatcacaggtatcagacgagcaaataatt 91  Q
    |||||| ||| | ||| ||||||||||||||| ||||||| |||||||||||||||| ||||    
T  35271325 tgacacactgttcgagatcccatactttaattgcatcacatgtatcagacgagcaaagaatt 35271386  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 35275349 - 35275391
Alignment:
Q  26 atcatgacacgctgattgaggtcccatactttaattacatcac 68  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||    
T  35275349 atcatgacacgctgattgagatcccataatttaattgcatcac 35275391  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 35275605 - 35275658
Alignment:
Q  284 cagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatgg 337  Q
    ||||||| |||||||||||||  ||| |||||||||||||||  ||||||||||    
T  35275605 cagaagaagttgcaaatataggtgatgctggttgaaatctaaattctaagatgg 35275658  T

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