View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12873_high_12 (Length: 358)
Name: NF12873_high_12
Description: NF12873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12873_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 39242855 - 39242510
Alignment:
| Q |
1 |
ctcaaaaggtgtcacaattttactgtgtccaaaatcagtgtcacataatgtgacaaacgtattcaaagagaccctagtaaaaacattgatgagaacgtga |
100 |
Q |
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| T |
39242855 |
ctcaaaaggtgtcacaattttactgtgtccaaaatcagtgtcacataatgtgacaaacgtattcaaagagaccctagtaaaaacattgatgagaacgtga |
39242756 |
T |
|
| Q |
101 |
tttgattaatttagagatgttggagtttaaagagcaaagtgcagtaataactacaaaagtcttccttttttctttacaataactacaaaagtcttcctgt |
200 |
Q |
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| T |
39242755 |
tttgattaatttagagatgttggagtttaaagagcaaagtgcagtaataactacaaaagtcttccttttttctttacaataactacaaaagtcttcctgt |
39242656 |
T |
|
| Q |
201 |
gtttcatttccattatatattacagacattatacatgtaaatcaacttgtgttgctgaaacacaagaaaacaacaaaaagtggtacaatgatatcaattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39242655 |
gtttcatttccattatatattacagacattatacatgtaaatcaacttgtgttgctgaaacacaagaaaacaacaaaaagtggtacaatgatatcaattt |
39242556 |
T |
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| Q |
301 |
aagccttcttgagggtaaccaaatccactgtaccgccacaggttct |
346 |
Q |
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| T |
39242555 |
aagccttcttgagggtaaccaaatccattgtaccgccataggttct |
39242510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 216 - 327
Target Start/End: Complemental strand, 809020 - 808902
Alignment:
| Q |
216 |
tatattacagacattatacatgtaaatcaacttgtgttgctgaaacacaagaaaacaacaaaaagtggtacaatga--------tatcaatttaagcctt |
307 |
Q |
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| T |
809020 |
tatattacaaacattatacatgtaaatcaacttctatt-ctggaacacaggaaaacaactaaaataggtacaatgatacattattatcaatttatgcctt |
808922 |
T |
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| Q |
308 |
cttgagggtaaccaaatcca |
327 |
Q |
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| T |
808921 |
cttgagggtaaccaaatcca |
808902 |
T |
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