View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12873_high_15 (Length: 349)
Name: NF12873_high_15
Description: NF12873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12873_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 42083340 - 42083066
Alignment:
| Q |
1 |
taagtgttagtgagaaaccagataaactctacgtaagtcacaaaaccttatcgtccatgttcatttattaaattttaagatattaattatttgaaagcta |
100 |
Q |
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| T |
42083340 |
taagtgttggtgagaaaccagataaactctacgtaagtcacaaaaccttatcgtccatgttcatttattaaattttaagatattaattatttgaaagcta |
42083241 |
T |
|
| Q |
101 |
tgtagcaccgatgcttcatattcaagaaagacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaa |
200 |
Q |
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| T |
42083240 |
tgcagcaccgatgcttcatattaaagaaagacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattattatcgatgtcaa |
42083141 |
T |
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| Q |
201 |
tgtctcagttgtgtttgttgtatcatctagaactgaatattgttttcttccttttggtggttgtgaaaacaggtg |
275 |
Q |
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| T |
42083140 |
tgtctcagttgtgtttgttgtatcatctagaactgaatattgttttcttccttttggtggttgtgaaaacaggtg |
42083066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 42086825 - 42086665
Alignment:
| Q |
33 |
gtaagtcacaaaaccttatcgtccatgttcatttattaaattttaagatattaattatttgaaagctatgtagcaccgatgcttcatattcaagaaagac |
132 |
Q |
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| T |
42086825 |
gtaagtcacaaaaccctttc-tccatgtgcatatattaaatttgaaggtatga----tttgaaagctatgtagcac-gacacttcatatt----aatgac |
42086736 |
T |
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| Q |
133 |
gtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgt |
203 |
Q |
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| T |
42086735 |
gtatctggtgtccaatacttgtagttacattcaatttcatccatttttaaaattgttattgatgtcaatgt |
42086665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 42083067 - 42083014
Alignment:
| Q |
296 |
tgctgagatgtttatgtatgtcggtacacttagggtgctgacagagggccgtgc |
349 |
Q |
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| T |
42083067 |
tgctgagatgtttctgtatgtcggtacacttagggtgctgacagagggccgtgc |
42083014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 42086611 - 42086520
Alignment:
| Q |
228 |
tagaactgaatattgttttcttccttttggtggttgtgaaaacaggtggttgagtcattagtacccattgctgagatgtttatgtatgtcggtacact |
325 |
Q |
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| T |
42086611 |
tagaactgaacattgttttcttccttttggtg------aaaacaggtggttgattcattagtacctcttgctgagatgtttcagtatgtcagtacact |
42086520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 22284482 - 22284533
Alignment:
| Q |
141 |
tgtccgacacttgtagttacattcaatttcttccatttttcaaattattatc |
192 |
Q |
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|||||||||| || |||||||||||| || |||||||||||||||||||||| |
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| T |
22284482 |
tgtccgacacatgcagttacattcaaatttttccatttttcaaattattatc |
22284533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 37603961 - 37603915
Alignment:
| Q |
152 |
tgtagttacattcaatttcttccatttttcaaattattatcgttgtc |
198 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||| |||| |
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| T |
37603961 |
tgtatttacattcaatttcttccatttttcaaattgttatcggtgtc |
37603915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 3262086 - 3262022
Alignment:
| Q |
145 |
cgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctcagt |
209 |
Q |
| |
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|||||| ||||||||| |||||||||||| ||||| |||||||||| ||||||||| ||||| |
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| T |
3262086 |
cgacacatgtagttactttcaatttcttctattttgaaaattattataaatgtcaatgtgtcagt |
3262022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 6933194 - 6933139
Alignment:
| Q |
154 |
tagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctcagt |
209 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||| |||| |||| ||||| |
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| T |
6933194 |
tagttactttcaatttcttccatttttcaaaatactatcggtgtcgatgtgtcagt |
6933139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 18626976 - 18626931
Alignment:
| Q |
147 |
acacttgtagttacattcaatttcttccatttttcaaattattatc |
192 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
18626976 |
acacatgtagttatattcagtttcttccagttttcaaattattatc |
18626931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 30922574 - 30922528
Alignment:
| Q |
152 |
tgtagttacattcaatttcttccatttttcaaattattatcgttgtc |
198 |
Q |
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| T |
30922574 |
tgtagttacattcaatttattgcatttttctaattattatcattgtc |
30922528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 8217034 - 8217086
Alignment:
| Q |
152 |
tgtagttacattcaatttcttccatttt-tcaaattattatcgttgtcaatgt |
203 |
Q |
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||||||||||||||||| |||| ||||| | ||||||||||||||||| |||| |
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| T |
8217034 |
tgtagttacattcaattccttctattttctaaaattattatcgttgtctatgt |
8217086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 19629069 - 19629033
Alignment:
| Q |
156 |
gttacattcaatttcttccatttttcaaattattatc |
192 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |
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| T |
19629069 |
gttacattcaattacttccatttttcaaagtattatc |
19629033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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